Non-Coding RNA Search

Ss1.1-Tra1-TCH01E080083.5.120

Sequence:


               
               AGCGTCTCAGGAGAGCTCGAGACGCACCCCCAGCCAGCCATGGCCCGGTTCTTTCGGGCA
TCCTGCCTTATCTCCCTGCTCCTGGCCGGCTTCCTCCCGCCGAGCCGGGGACAGGAGAAG
TCGAAGACGGACTGCTATCGCGGTGTGAGTGGCACCATCTATGAGTATGGAGCTCTCACC
ATCGACGGGGAGGAGTACATCCCTTTTAAGAAGTACGCTGGCAAGTACGTCCTCTTTGTC
AACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACGTTGAACTGAATGCACTGCAGGAA
GAGTTTGCACCCTTTGGCCTCGTCATTCTGGGCTTCCCCTGCAACCAATTTGGAAAACAG
GAACCGGGAGACAACTCGGAGATTCTGTCCACTCTCAGGTATGTCCGACCAGGTGGGGGC
TTCATCCCCAATTTCCAGCTCTTTGAGAAAGGGGACGTGAACGGGGAGAAGGAGCAGAAG
TTCTACACGTTCCTGAAGAACGCCTGTCCTCCTACTTCGGAGCTCCTGGGCTCACCGGGC
CGCCTATTCTGGGAACCCATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTG
GTGGGGCCCGACGGTGTGCCCGTCATGCGCTGGTACCACCGCACCACCATCAACACTGTC
AAGCTGGACATCCTGGCCTACATGCGGCGGCGGGCAGCCCTGGAGGCCAAGCGGCAGTAA
TGGAGGCCCACCCCACCCTGTGCCCACCCCCCAGGGGCTGGGGAGGACTCTGTTCAGGAA
GGAATCCATTTCTACAACCACGCCGCTGTCCCCTGCTAGACCCCTCACTAGGACACAAGG
GCCCAGCCCGACAGGAAGGTGTGCACACAACTGTGTCTGTACTGCTGTGCTTGTGAGCGT
GTGCATGCGTGCCTACAGGTGTGTGTGATCACAGGAGTGCACTGCCACTTACAGGCGTGG
CGACCTGCAGGAATCCCCAGGCCTGTAAGTGTGCCCACAGCTGTGTGCCAGGGGCGGGGT
GCCGGAGCGTCACTCCCCTCTCGCTCTGGTTCTCTGCTCCAATGATCACAACTCACTTTC
AGTGAGCCCAAAGGAAAAAACCAGTTCTAGATTCAGTTGGTCTGCTCTAACCTGGCCTTT
AGCCCTTGGGGCCAGCATCTCCCACTGCCTCCAGACACCACCAGTGAAGTGCCCAGAAGC
TTCTGGGTCTGCCACACAGCCCCCCTCTCCCCGACATGGCCTCTCTCCTTCCTGAGGGCC
CTCTCAAGCCCCCTGCCCCACCCCACAGTGTTCCCTGAGAGCAGCCAAGGCAGATGTGAG
AGCAAAGGCCACGATCCCAGTGTCAGGGGTGGCATCTTCATGAAGGAGGGGCCCGAAGCC
CTCATGGGCGGACCCCCCTTGAGCCTGTCTGAAGGTCTGGCCCTTCGTGCATTCAGGCCA
AGGCCCCCAGGCAGAGATGCCACCACTGCTTCTTCGGGGGATGTGTCCTCTCCCCTCACC
CTGACCTGCTGGCATTAGACTCACCCCGTGTACCTAGTAAAGGCCTTTCTGCAGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTCTCAGGAGAGCTCGAGACGCACCCCCAGCCAGCCATGGCCCGGTTCTTTCGGGCA
TCCTGCCTTATCTCCCTGCTCCTGGCCGGCTTCCTCCCGCCGAGCCGGGGACAGGAGAAG
TCGAAGACGGACTGCTATCGCGGTGTGAGTGGCACCATCTATGAGTATGGAGCTCTCACC
ATCGACGGGGAGGAGTACATCCCTTTTAAGAAGTACGCTGGCAAGTACGTCCTCTTTGTC
AACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACGTTGAACTGAATGCACTGCAGGAA
GAGTTTGCACCCTTTGGCCTCGTCATTCTGGGCTTCCCCTGCAACCAATTTGGAAAACAG
GAACCGGGAGACAACTCGGAGATTCTGTCCACTCTCAGGTATGTCCGACCAGGTGGGGGC
TTCATCCCCAATTTCCAGCTCTTTGAGAAAGGGGACGTGAACGGGGAGAAGGAGCAGAAG
TTCTACACGTTCCTGAAGAACGCCTGTCCTCCTACTTCGGAGCTCCTGGGCTCACCGGGC
CGCCTATTCTGGGAACCCATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTG
GTGGGGCCCGACGGTGTGCCCGTCATGCGCTGGTACCACCGCACCACCATCAACACTGTC
AAGCTGGACATCCTGGCCTACATGCGGCGGCGGGCAGCCCTGGAGGCCAAGCGGCAGTAA
TGGAGGCCCACCCCACCCTGTGCCCACCCCCCAGGGGCTGGGGAGGACTCTGTTCAGGAA
GGAATCCATTTCTACAACCACGCCGCTGTCCCCTGCTAGACCCCTCACTAGGACACAAGG
GCCCAGCCCGACAGGAAGGTGTGCACACAACTGTGTCTGTACTGCTGTGCTTGTGAGCGT
GTGCATGCGTGCCTACAGGTGTGTGTGATCACAGGAGTGCACTGCCACTTACAGGCGTGG
CGACCTGCAGGAATCCCCAGGCCTGTAAGTGTGCCCACAGCTGTGTGCCAGGGGCGGGGT
GCCGGAGCGTCACTCCCCTCTCGCTCTGGTTCTCTGCTCCAATGATCACAACTCACTTTC
AGTGAGCCCAAAGGAAAAAACCAGTTCTAGATTCAGTTGGTCTGCTCTAACCTGGCCTTT
AGCCCTTGGGGCCAGCATCTCCCACTGCCTCCAGACACCACCAGTGAAGTGCCCAGAAGC
TTCTGGGTCTGCCACACAGCCCCCCTCTCCCCGACATGGCCTCTCTCCTTCCTGAGGGCC
CTCTCAAGCCCCCTGCCCCACCCCACAGTGTTCCCTGAGAGCAGCCAAGGCAGATGTGAG
AGCAAAGGCCACGATCCCAGTGTCAGGGGTGGCATCTTCATGAAGGAGGGGCCCGAAGCC
CTCATGGGCGGACCCCCCTTGAGCCTGTCTGAAGGTCTGGCCCTTCGTGCATTCAGGCCA
AGGCCCCCAGGCAGAGATGCCACCACTGCTTCTTCGGGGGATGTGTCCTCTCCCCTCACC
CTGACCTGCTGGCATTAGACTCACCCCGTGTACCTAGTAAAGGCCTTTCTGCAGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UJZ1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UJZ1_PIG

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               161-280, + strand, RNAz p=0.746128
               

               
               497-695, - strand, RNAz p=0.980254
               

               
               847-988, - strand, RNAz p=0.999574
               

               
               1145-1249, - strand, RNAz p=0.966728
               

               
               1323-1481, + strand, RNAz p=0.867276

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, + strand, RNAz p=0.746128
               

               
               497-695, - strand, RNAz p=0.980254
               

               
               847-988, - strand, RNAz p=0.999574
               

               
               1145-1249, - strand, RNAz p=0.966728
               

               
               1323-1481, + strand, RNAz p=0.867276

ncRNA annotation: 1 entry(ies)

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               1352-1415, , RaveNnA Score=21.06

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1352-1415, , RaveNnA Score=21.06

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC050378, +
               

               
               3' of BC050378, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC050378, +
               

               
               3' of BC050378, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               125-280, gnl|bosTau2|chr7 (42934391-42934546)
               

               
               125-280, gnl|Hg17|chr5 (150385092-150385247)
               

               
               125-280, gnl|Mm7|chr11 (54863882-54864037)
               


               
               497-1556, gnl|bosTau2|chr7 (42936842-42937886)
               

               
               497-1556, gnl|Hg17|chr5 (150387661-150388742)
               

               
               497-1556, gnl|Mm7|chr11 (54866192-54867134)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-280, gnl|bosTau2|chr7 (42934391-42934546)
               

               
               125-280, gnl|Hg17|chr5 (150385092-150385247)
               

               
               125-280, gnl|Mm7|chr11 (54863882-54864037)
               


               
               497-1556, gnl|bosTau2|chr7 (42936842-42937886)
               

               
               497-1556, gnl|Hg17|chr5 (150387661-150388742)
               

               
               497-1556, gnl|Mm7|chr11 (54866192-54867134)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cov (31.4524)
               

               
               cki (4.62657)
               

               
               cag (0.453583)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (31.4524)
               

               
               cki (4.62657)
               

               
               cag (0.453583)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)

	161-280, + strand, RNAz p=0.746128
	497-695, - strand, RNAz p=0.980254
	847-988, - strand, RNAz p=0.999574
	1145-1249, - strand, RNAz p=0.966728
	1323-1481, + strand, RNAz p=0.867276

	125-280, gnl\|bosTau2\|chr7 (42934391-42934546)
	125-280, gnl\|Hg17\|chr5 (150385092-150385247)
	125-280, gnl\|Mm7\|chr11 (54863882-54864037)

	497-1556, gnl\|bosTau2\|chr7 (42936842-42937886)
	497-1556, gnl\|Hg17\|chr5 (150387661-150388742)
	497-1556, gnl\|Mm7\|chr11 (54866192-54867134)

	cov (31.4524)
	cki (4.62657)
	cag (0.453583)
	cty (0.31224)
	sme (0.305437)
	che (0.136314)
	cly (0.120642)
	clu (0.119646)
	pgl (0.118483)