Non-Coding RNA Search

Ss1.1-Pig4-TMW8017I18.5

Sequence:


               
               GTTGACGCAGCCGGCCGGGCCAGGCCCTACGCTGGTGGCTATGGAGCAGGACGGGGACCA
GCTGTCCGCGCGGCCGGCCCTGGAGACCGAAGGCCTGCGCTTCCTTCACGTCACGGTGGG
CTCCCTGCTGGCCACCTATGGCTGGTACATCGTCTTCTGCTGCATTCTTCTCTACGTGGT
CTTTCAGAAGCTGTCTACCCGGCTGAGGGCCTTGAGGCAGAGGCACCTGGATGGAGCTGC
TGCTGCCCTGGAACCTGATGTTGTTGTTAAACGACAGGAGGCTTTAGCAGCAGCTCGTTT
GAAAATGCAAGAAGAATTAAATGCACAAGTTGAAAAGCATAAGGAGAAGCTAAGACAGCT
CGAAGAAGAAAAAAGGAGACAGAAGATTGAAAGATGGGACAGCGTGCAAGAAGGAAGAAG
TTATAGAGGAGATGCAAGGAAGCGTCAGGAAGAAGATAGCCCTGGACCTTCTACTTCGTC
AGTCATCCCGAAACGAAAATCTGACAAGAAGCCTTTGCGGGGAGGAGGTTACAACCCTTT
GTCTGGAGAAGGAGGTGGAGCCTGCTCCTGGAGGCCTGGCCGCAGAGGCCCGTCATCTGG
TGGATGAGGCTAAGAATCTTGCTAGTGTCGCTTTTGACATTAGCAAGATGAATCCTTAAC
CCTCAATTGCCTTACGCATGCTTTTCACAGTGACTAGCAGGAGGAGGGGGCTTTCTTTGT
GATATTAGCCATACTCACGTCTTCAAGCATTAAAGCAGCATAGGGCGTGGACATGGTCGC
TTGGCAGCAGTTGGCACTTGGCCACACTCCACTGAAGCCAGTGACTGTGGTCATTGATTC
CATGGGTAATTAATTGCTATTTGGTAGCTAAAGGCCTCCAATGATTGGTGATCTTGATAA
AAGAGACCTAGCAATGTAGTGATCCTTCAAGTTAAGAGGTCCTTGCTGGCAGAAAAGTCT
CTGTGACAGGTTGCGTTGAATGATGTCTTCCTTGTAAATGGTGAGCCCACCAGCGAGGAG
CACTGATGCAGACAGTTGATAGGGTTGTTTCTGTATATTTATTTTTATGTACAGAACTTT
GTAAAAAAGAAACTGTAAATATTAAAAAAAACTGCAAAGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGACGCAGCCGGCCGGGCCAGGCCCTACGCTGGTGGCTATGGAGCAGGACGGGGACCA
GCTGTCCGCGCGGCCGGCCCTGGAGACCGAAGGCCTGCGCTTCCTTCACGTCACGGTGGG
CTCCCTGCTGGCCACCTATGGCTGGTACATCGTCTTCTGCTGCATTCTTCTCTACGTGGT
CTTTCAGAAGCTGTCTACCCGGCTGAGGGCCTTGAGGCAGAGGCACCTGGATGGAGCTGC
TGCTGCCCTGGAACCTGATGTTGTTGTTAAACGACAGGAGGCTTTAGCAGCAGCTCGTTT
GAAAATGCAAGAAGAATTAAATGCACAAGTTGAAAAGCATAAGGAGAAGCTAAGACAGCT
CGAAGAAGAAAAAAGGAGACAGAAGATTGAAAGATGGGACAGCGTGCAAGAAGGAAGAAG
TTATAGAGGAGATGCAAGGAAGCGTCAGGAAGAAGATAGCCCTGGACCTTCTACTTCGTC
AGTCATCCCGAAACGAAAATCTGACAAGAAGCCTTTGCGGGGAGGAGGTTACAACCCTTT
GTCTGGAGAAGGAGGTGGAGCCTGCTCCTGGAGGCCTGGCCGCAGAGGCCCGTCATCTGG
TGGATGAGGCTAAGAATCTTGCTAGTGTCGCTTTTGACATTAGCAAGATGAATCCTTAAC
CCTCAATTGCCTTACGCATGCTTTTCACAGTGACTAGCAGGAGGAGGGGGCTTTCTTTGT
GATATTAGCCATACTCACGTCTTCAAGCATTAAAGCAGCATAGGGCGTGGACATGGTCGC
TTGGCAGCAGTTGGCACTTGGCCACACTCCACTGAAGCCAGTGACTGTGGTCATTGATTC
CATGGGTAATTAATTGCTATTTGGTAGCTAAAGGCCTCCAATGATTGGTGATCTTGATAA
AAGAGACCTAGCAATGTAGTGATCCTTCAAGTTAAGAGGTCCTTGCTGGCAGAAAAGTCT
CTGTGACAGGTTGCGTTGAATGATGTCTTCCTTGTAAATGGTGAGCCCACCAGCGAGGAG
CACTGATGCAGACAGTTGATAGGGTTGTTTCTGTATATTTATTTTTATGTACAGAACTTT
GTAAAAAAGAAACTGTAAATATTAAAAAAAACTGCAAAGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SELS_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SELS_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               565-717, - strand, RNAz p=0.993148
               

               
               994-1111, + strand, RNAz p=0.866989

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-717, - strand, RNAz p=0.993148
               

               
               994-1111, + strand, RNAz p=0.866989

ncRNA annotation: 1 entry(ies)

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               970-1036, , RaveNnA Score=18.25

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               970-1036, , RaveNnA Score=18.25

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC008759, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008759, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               116-251, gnl|bosTau2|chr21 (2697000-2697135)
               

               
               116-251, gnl|Hg17|chr15 (99634404-99634269)
               

               
               116-251, gnl|Mm7|chr7 (61938298-61938433)
               


               
               356-469, gnl|bosTau2|chr21 (2702587-2702698)
               

               
               356-469, gnl|Hg17|chr15 (99632412-99632300)
               

               
               356-469, gnl|Mm7|chr7 (61944911-61945005)
               


               
               526-1111, gnl|bosTau2|chr21 (2704676-2705252)
               

               
               526-1111, gnl|Hg17|chr15 (99630586-99630006)
               

               
               526-1111, gnl|Mm7|chr7 (61946732-61947285)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-251, gnl|bosTau2|chr21 (2697000-2697135)
               

               
               116-251, gnl|Hg17|chr15 (99634404-99634269)
               

               
               116-251, gnl|Mm7|chr7 (61938298-61938433)
               


               
               356-469, gnl|bosTau2|chr21 (2702587-2702698)
               

               
               356-469, gnl|Hg17|chr15 (99632412-99632300)
               

               
               356-469, gnl|Mm7|chr7 (61944911-61945005)
               


               
               526-1111, gnl|bosTau2|chr21 (2704676-2705252)
               

               
               526-1111, gnl|Hg17|chr15 (99630586-99630006)
               

               
               526-1111, gnl|Mm7|chr7 (61946732-61947285)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               sto (0.719295)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.719295)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	565-717, - strand, RNAz p=0.993148
	994-1111, + strand, RNAz p=0.866989

	116-251, gnl\|bosTau2\|chr21 (2697000-2697135)
	116-251, gnl\|Hg17\|chr15 (99634404-99634269)
	116-251, gnl\|Mm7\|chr7 (61938298-61938433)

	356-469, gnl\|bosTau2\|chr21 (2702587-2702698)
	356-469, gnl\|Hg17\|chr15 (99632412-99632300)
	356-469, gnl\|Mm7\|chr7 (61944911-61945005)

	526-1111, gnl\|bosTau2\|chr21 (2704676-2705252)
	526-1111, gnl\|Hg17\|chr15 (99630586-99630006)
	526-1111, gnl\|Mm7\|chr7 (61946732-61947285)

	sto (0.719295)
	pro (0.512033)
	tbr (0.462535)
	elu (0.385356)
	rec (0.346141)
	vin (0.332557)
	sme (0.305437)
	ssp (0.271039)
	cbe (0.239234)
	fcc (0.197785)
	cmu (0.186393)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	lin (0.145603)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	che (0.136314)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)