Non-Coding RNA Search

Blo1-PBL010030B02

Sequence:


               
               ATGTTTTAAACAGCTGTCTTTGTAGACCACGGTCAGCACCTGAGCCTAGGAGGGCTCGTG
GAGGAAAACTTGTCAGTGTGGTTGTTTTTGATCTGTGAGATGAGAAGAGTAACCATGGCC
TTTTACAGTGCTGGGTGAGTGGGCAGTTCTTTCAGCTCCCACGGCCAACTGGGGCAGAGA
CTGGGACTCGGAGAGGTGGCTTCTGTCCCTTTCTCTCCTCAGTGGGTGAGTCGCCGCATC
AGGATAAGTGGCTACACCTGTCCCACTCCCAAGCCCATGCCCCTTGTCCGTGGCTCACTC
ATCTTTGGTGCTGATGGCAGGACTGGGCACCAGCATGTAGGTAGCACCACATTTCACCGT
GCCTCTTGGTGAGATGTCCCCACACAGCATGCCTGGAGCCTTTCCCTAAGAAAACAGATG
GTCGTGGGACCCAGAACACCATCAGGGCTCCCAGTGCCTCTGCTCCAAGTCTGTGTTTTC
CTCGAGGGTGGCACCCACCCACGCGTTCCCAGAACAGCAGCAGGACCCTGGCATGCATTA
GGACAAAAGCGTTCTTTTTTATTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTTTAAACAGCTGTCTTTGTAGACCACGGTCAGCACCTGAGCCTAGGAGGGCTCGTG
GAGGAAAACTTGTCAGTGTGGTTGTTTTTGATCTGTGAGATGAGAAGAGTAACCATGGCC
TTTTACAGTGCTGGGTGAGTGGGCAGTTCTTTCAGCTCCCACGGCCAACTGGGGCAGAGA
CTGGGACTCGGAGAGGTGGCTTCTGTCCCTTTCTCTCCTCAGTGGGTGAGTCGCCGCATC
AGGATAAGTGGCTACACCTGTCCCACTCCCAAGCCCATGCCCCTTGTCCGTGGCTCACTC
ATCTTTGGTGCTGATGGCAGGACTGGGCACCAGCATGTAGGTAGCACCACATTTCACCGT
GCCTCTTGGTGAGATGTCCCCACACAGCATGCCTGGAGCCTTTCCCTAAGAAAACAGATG
GTCGTGGGACCCAGAACACCATCAGGGCTCCCAGTGCCTCTGCTCCAAGTCTGTGTTTTC
CTCGAGGGTGGCACCCACCCACGCGTTCCCAGAACAGCAGCAGGACCCTGGCATGCATTA
GGACAAAAGCGTTCTTTTTTATTTCATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               299-416, - strand, RNAz p=0.809184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-416, - strand, RNAz p=0.809184

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               281-396, - strand, RNAmicro p=0.987838
               

               
               290-368, + strand, RNAmicro p=0.978624

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               281-396, - strand, RNAmicro p=0.987838
               

               
               290-368, + strand, RNAmicro p=0.978624

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-569, gnl|bosTau2|chr13 (41242948-41243524)
               

               
               1-569, gnl|Hg17|chr20 (1320058-1319494)
               

               
               1-569, gnl|Mm7|chr2 (151284998-151285714)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-569, gnl|bosTau2|chr13 (41242948-41243524)
               

               
               1-569, gnl|Hg17|chr20 (1320058-1319494)
               

               
               1-569, gnl|Mm7|chr2 (151284998-151285714)

	281-396, - strand, RNAmicro p=0.987838
	290-368, + strand, RNAmicro p=0.978624

	1-569, gnl\|bosTau2\|chr13 (41242948-41243524)
	1-569, gnl\|Hg17\|chr20 (1320058-1319494)
	1-569, gnl\|Mm7\|chr2 (151284998-151285714)