Non-Coding RNA Search

Blo1-PBL010056A06

Sequence:


               
               AGGTATTTTCCACCACGAGTACCCGAAGGGAGCCAGGCCCCCGTGAGGCAGCTGCTGTCG
GTTAGGAAGCCAAGCTGCCAGCTTCTTGCAGGTCAGGGCCACCTGCCTGTGTGTCTCTCT
GGAGTGTGGTCATTCCTGACTCTAGAGAGCAGGGCACGGTTTTGTGGCCCAGCAGTCAAG
CCCGATGTGGCTTCCCTTAATTGAGCTTTCCAAGGGTTTTGGCCACAAGACCAGATTGCA
GCTGTGGCCTGAGCATCTTTAGAAGTGTGAATCATTTTTTTTTTTATTCCTGAAGAAGTT
ATTTTGAGCTTTATAATTTCTATTTCCATGTTGCTTTTTTCATAGAGTGAGTAAGGAGAA
TGACTTGCATTTTTTTTCTTTCTTTTTCATAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTATTTTCCACCACGAGTACCCGAAGGGAGCCAGGCCCCCGTGAGGCAGCTGCTGTCG
GTTAGGAAGCCAAGCTGCCAGCTTCTTGCAGGTCAGGGCCACCTGCCTGTGTGTCTCTCT
GGAGTGTGGTCATTCCTGACTCTAGAGAGCAGGGCACGGTTTTGTGGCCCAGCAGTCAAG
CCCGATGTGGCTTCCCTTAATTGAGCTTTCCAAGGGTTTTGGCCACAAGACCAGATTGCA
GCTGTGGCCTGAGCATCTTTAGAAGTGTGAATCATTTTTTTTTTTATTCCTGAAGAAGTT
ATTTTGAGCTTTATAATTTCTATTTCCATGTTGCTTTTTTCATAGAGTGAGTAAGGAGAA
TGACTTGCATTTTTTTTCTTTCTTTTTCATAGAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               166-377, - strand, RNAz p=0.827339
               

               
               199-306, - strand, RNAz p=0.931727

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-377, - strand, RNAz p=0.827339
               

               
               199-306, - strand, RNAz p=0.931727

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               13-377, gnl|bosTau2|chr4 (33085497-33085867)
               

               
               13-377, gnl|canFam2|chr14 (51348437-51348898)
               

               
               13-377, gnl|dasNov1|scaffold_9181 (4240-4736)
               

               
               13-377, gnl|echTel1|scaffold_319071 (188868-189389)
               

               
               13-377, gnl|hg17|chr7 (36896235-36896749)
               

               
               13-377, gnl|Hg17|chr7 (36896674-36896292)
               

               
               13-377, gnl|loxAfr1|scaffold_171921 (37-568)
               

               
               13-377, gnl|mm7|chr13 (19754948-19754410)
               

               
               13-377, gnl|Mm7|chr13 (19754484-19754882)
               

               
               13-377, gnl|oryCun1|scaffold_186718 (12054-11541)
               

               
               13-377, gnl|panTro1|chr6 (38088224-38088739)
               

               
               13-377, gnl|rheMac2|chr3 (89149809-89149291)
               

               
               13-377, gnl|rn3|chr17 (52202423-52202958)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-377, gnl|bosTau2|chr4 (33085497-33085867)
               

               
               13-377, gnl|canFam2|chr14 (51348437-51348898)
               

               
               13-377, gnl|dasNov1|scaffold_9181 (4240-4736)
               

               
               13-377, gnl|echTel1|scaffold_319071 (188868-189389)
               

               
               13-377, gnl|hg17|chr7 (36896235-36896749)
               

               
               13-377, gnl|Hg17|chr7 (36896674-36896292)
               

               
               13-377, gnl|loxAfr1|scaffold_171921 (37-568)
               

               
               13-377, gnl|mm7|chr13 (19754948-19754410)
               

               
               13-377, gnl|Mm7|chr13 (19754484-19754882)
               

               
               13-377, gnl|oryCun1|scaffold_186718 (12054-11541)
               

               
               13-377, gnl|panTro1|chr6 (38088224-38088739)
               

               
               13-377, gnl|rheMac2|chr3 (89149809-89149291)
               

               
               13-377, gnl|rn3|chr17 (52202423-52202958)

	166-377, - strand, RNAz p=0.827339
	199-306, - strand, RNAz p=0.931727

	13-377, gnl\|bosTau2\|chr4 (33085497-33085867)
	13-377, gnl\|canFam2\|chr14 (51348437-51348898)
	13-377, gnl\|dasNov1\|scaffold_9181 (4240-4736)
	13-377, gnl\|echTel1\|scaffold_319071 (188868-189389)
	13-377, gnl\|hg17\|chr7 (36896235-36896749)
	13-377, gnl\|Hg17\|chr7 (36896674-36896292)
	13-377, gnl\|loxAfr1\|scaffold_171921 (37-568)
	13-377, gnl\|mm7\|chr13 (19754948-19754410)
	13-377, gnl\|Mm7\|chr13 (19754484-19754882)
	13-377, gnl\|oryCun1\|scaffold_186718 (12054-11541)
	13-377, gnl\|panTro1\|chr6 (38088224-38088739)
	13-377, gnl\|rheMac2\|chr3 (89149809-89149291)
	13-377, gnl\|rn3\|chr17 (52202423-52202958)