Non-Coding RNA Search

Blo2-AR040F06PBC30GF06S

Sequence:


               
               TGCNNNNNTTCGGCACCAGAATNNNTCCAACCCCCTTATTTTACAGATGAGTACANNNGG
AGGTTAAATGACTTACTGAAGGTTGCAGGGCTACTGATGGTCTGACTAGGCCCATTATAG
TCTTGCACCCCTCAGTCCTTCCCTAATTCATCTTTCATGATACTGCTCAGTGAACCCCGC
TAAGCTCTTGGCCCCAGGCAAGGGGTTTATTTGGGGATCCAGAAAATGAGAGTGGATGCC
CTAATTTGGAGCTGCAGAAATATAGATATTAAAAGTAGTGGCGGCGTTTGTTTAGTGACC
CTCGAACAAAGACATTTTGTTAATCTCCTGCTAATAAAATTCCCNNNNCCCGGATTCCAC
ATGTAACAGGTTCCATGCCCCTTCATGGAGACATATCTCCATCTATGAAATGTCAAAAAT
TAAAGAAGCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCNNNNNTTCGGCACCAGAATNNNTCCAACCCCCTTATTTTACAGATGAGTACANNNGG
AGGTTAAATGACTTACTGAAGGTTGCAGGGCTACTGATGGTCTGACTAGGCCCATTATAG
TCTTGCACCCCTCAGTCCTTCCCTAATTCATCTTTCATGATACTGCTCAGTGAACCCCGC
TAAGCTCTTGGCCCCAGGCAAGGGGTTTATTTGGGGATCCAGAAAATGAGAGTGGATGCC
CTAATTTGGAGCTGCAGAAATATAGATATTAAAAGTAGTGGCGGCGTTTGTTTAGTGACC
CTCGAACAAAGACATTTTGTTAATCTCCTGCTAATAAAATTCCCNNNNCCCGGATTCCAC
ATGTAACAGGTTCCATGCCCCTTCATGGAGACATATCTCCATCTATGAAATGTCAAAAAT
TAAAGAAGCCTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               20-179, + strand, RNAz p=0.995302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-179, + strand, RNAz p=0.995302

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               50-174, + strand, RNAmicro p=0.999978

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               50-174, + strand, RNAmicro p=0.999978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-432, gnl|bosTau2|chr10 (15638889-15638475)
               

               
               20-432, gnl|Hg17|chr14 (20633504-20633105)
               

               
               20-432, gnl|Mm7|chr14 (47345452-47345081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-432, gnl|bosTau2|chr10 (15638889-15638475)
               

               
               20-432, gnl|Hg17|chr14 (20633504-20633105)
               

               
               20-432, gnl|Mm7|chr14 (47345452-47345081)

	20-432, gnl\|bosTau2\|chr10 (15638889-15638475)
	20-432, gnl\|Hg17\|chr14 (20633504-20633105)
	20-432, gnl\|Mm7\|chr14 (47345452-47345081)