Non-Coding RNA Search

Blo2-AR041A12PBC30HA12S

Sequence:


               
               GACTTACTGGTCCCTGTGGTTTCAGAGGATGGAGCCCCATCCCATTTTGTGTAACCTGGA
GAATGGCTTGCTCTCAGCTTTCAACTTNNNAGTTCTAAAGGTACACAGAAAAAAAGTTTT
ACTTATGTGCCTAAAATTGGGGGAGGGGAATAAGTTTCATATAAATGTCATCTTTTGTGC
TAACATCTAAAACTTCATTTAAATNNNTAAGGTAAATGCTTTANNNGAAAAGACCGTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTACTGGTCCCTGTGGTTTCAGAGGATGGAGCCCCATCCCATTTTGTGTAACCTGGA
GAATGGCTTGCTCTCAGCTTTCAACTTNNNAGTTCTAAAGGTACACAGAAAAAAAGTTTT
ACTTATGTGCCTAAAATTGGGGGAGGGGAATAAGTTTCATATAAATGTCATCTTTTGTGC
TAACATCTAAAACTTCATTTAAATNNNTAAGGTAAATGCTTTANNNGAAAAGACCGTCCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               115-232, - strand, RNAz p=0.966459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-232, - strand, RNAz p=0.966459

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               2-232, gnl|bosTau2|chr9 (20359132-20358919)
               

               
               2-232, gnl|canFam2|chr12 (70759281-70759752)
               

               
               2-232, gnl|dasNov1|scaffold_23837 (6936-6517)
               

               
               2-232, gnl|echTel1|scaffold_276410 (6625-6192)
               

               
               2-232, gnl|hg17|chr6 (111653658-111654123)
               

               
               2-232, gnl|Hg17|chr6 (111653853-111654079)
               

               
               2-232, gnl|loxAfr1|scaffold_17273 (22920-22450)
               

               
               2-232, gnl|oryCun1|scaffold_211712 (9801-10239)
               

               
               2-232, gnl|panTro1|chr5 (114000465-114000929)
               

               
               2-232, gnl|rheMac2|chr4 (152700373-152699900)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-232, gnl|bosTau2|chr9 (20359132-20358919)
               

               
               2-232, gnl|canFam2|chr12 (70759281-70759752)
               

               
               2-232, gnl|dasNov1|scaffold_23837 (6936-6517)
               

               
               2-232, gnl|echTel1|scaffold_276410 (6625-6192)
               

               
               2-232, gnl|hg17|chr6 (111653658-111654123)
               

               
               2-232, gnl|Hg17|chr6 (111653853-111654079)
               

               
               2-232, gnl|loxAfr1|scaffold_17273 (22920-22450)
               

               
               2-232, gnl|oryCun1|scaffold_211712 (9801-10239)
               

               
               2-232, gnl|panTro1|chr5 (114000465-114000929)
               

               
               2-232, gnl|rheMac2|chr4 (152700373-152699900)

	2-232, gnl\|bosTau2\|chr9 (20359132-20358919)
	2-232, gnl\|canFam2\|chr12 (70759281-70759752)
	2-232, gnl\|dasNov1\|scaffold_23837 (6936-6517)
	2-232, gnl\|echTel1\|scaffold_276410 (6625-6192)
	2-232, gnl\|hg17\|chr6 (111653658-111654123)
	2-232, gnl\|Hg17\|chr6 (111653853-111654079)
	2-232, gnl\|loxAfr1\|scaffold_17273 (22920-22450)
	2-232, gnl\|oryCun1\|scaffold_211712 (9801-10239)
	2-232, gnl\|panTro1\|chr5 (114000465-114000929)
	2-232, gnl\|rheMac2\|chr4 (152700373-152699900)