Non-Coding RNA Search

Blo2-AR042E11PBC30DG04S

Sequence:


               
               AGGAATTCGGCACCAGCCCCAGATCAGGACGCCCGGCCTGTCCGGGGAGAGGCCTGCAGC
CGAAGCACCATACCTGCCNNNATCATTACAGACACTGGTGCCCAGGAGGACGGGGCTTTG
GAGGAGGCGCNNNGAAGCCCCGGGGGCAGCCTGCCGCTCAGGAAGCTGTCCTCTTCCTCT
GCCTCCTCCACTGGCTTCTCCTCCTATGAGGACTCGGAGGAGGACATCNCCANTGACCCC
GAGCGCTGCCTGGACCCCAACTCTCCCTTCCTGCATACTCTGGACCAGCAGAAGCCCCGA
GTGAGCAAATCATGGAGGAAAATAAAAAACATGNTNCACTGGTCTCCCTTCNNCATGTCC
TTCAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATTCGGCACCAGCCCCAGATCAGGACGCCCGGCCTGTCCGGGGAGAGGCCTGCAGC
CGAAGCACCATACCTGCCNNNATCATTACAGACACTGGTGCCCAGGAGGACGGGGCTTTG
GAGGAGGCGCNNNGAAGCCCCGGGGGCAGCCTGCCGCTCAGGAAGCTGTCCTCTTCCTCT
GCCTCCTCCACTGGCTTCTCCTCCTATGAGGACTCGGAGGAGGACATCNCCANTGACCCC
GAGCGCTGCCTGGACCCCAACTCTCCCTTCCTGCATACTCTGGACCAGCAGAAGCCCCGA
GTGAGCAAATCATGGAGGAAAATAAAAAACATGNTNCACTGGTCTCCCTTCNNCATGTCC
TTCAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-303, - strand, RNAz p=0.996913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-303, - strand, RNAz p=0.996913

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               125-226, + strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               125-226, + strand, RNAmicro p=0.999998

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               101-293, BP199623 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP199623.1|), blast E-value=8e-38, identity=85.2% 
               

               
               101-293, 602569459F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb|BG541956.1|), 
blast E-value=8e-38, identity=85.2% 
               

               
               87-303, AR042E11PBC30DG04S Porcine Peripheral Blood Cell cDNA library, Cot 
(gb|BI186598.1|), blast E-value=0, identity=100% 
               

               
               101-293, AGENCOURT_7553553 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ229897.1|), blast E-value=8e-38, identity=85.2% 
               

               
               101-293, AGENCOURT_7894861 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BQ434930.1|), blast E-value=3e-40, identity=85.71% 
               

               
               101-292, nbj30f03.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB387461.1|), blast E-value=1e-39, identity=85.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               101-293, BP199623 Sugano cDNA library, brain Homo sapiens cDNA clone 
(dbj|BP199623.1|), blast E-value=8e-38, identity=85.2% 
               

               
               101-293, 602569459F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb|BG541956.1|), 
blast E-value=8e-38, identity=85.2% 
               

               
               87-303, AR042E11PBC30DG04S Porcine Peripheral Blood Cell cDNA library, Cot 
(gb|BI186598.1|), blast E-value=0, identity=100% 
               

               
               101-293, AGENCOURT_7553553 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ229897.1|), blast E-value=8e-38, identity=85.2% 
               

               
               101-293, AGENCOURT_7894861 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BQ434930.1|), blast E-value=3e-40, identity=85.71% 
               

               
               101-292, nbj30f03.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB387461.1|), blast E-value=1e-39, identity=85.64%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-303, gnl|bosTau2|chr16 (18099941-18100242)
               

               
               17-303, gnl|Hg17|chr1 (223230249-223229963)
               

               
               17-303, gnl|Mm7|chr1 (180314007-180314305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-303, gnl|bosTau2|chr16 (18099941-18100242)
               

               
               17-303, gnl|Hg17|chr1 (223230249-223229963)
               

               
               17-303, gnl|Mm7|chr1 (180314007-180314305)

	101-293, BP199623 Sugano cDNA library, brain Homo sapiens cDNA clone (dbj\|BP199623.1\|), blast E-value=8e-38, identity=85.2%
	101-293, 602569459F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb\|BG541956.1\|), blast E-value=8e-38, identity=85.2%
	87-303, AR042E11PBC30DG04S Porcine Peripheral Blood Cell cDNA library, Cot (gb\|BI186598.1\|), blast E-value=0, identity=100%
	101-293, AGENCOURT_7553553 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BQ229897.1\|), blast E-value=8e-38, identity=85.2%
	101-293, AGENCOURT_7894861 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb\|BQ434930.1\|), blast E-value=3e-40, identity=85.71%
	101-292, nbj30f03.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA (gb\|EB387461.1\|), blast E-value=1e-39, identity=85.64%

	17-303, gnl\|bosTau2\|chr16 (18099941-18100242)
	17-303, gnl\|Hg17\|chr1 (223230249-223229963)
	17-303, gnl\|Mm7\|chr1 (180314007-180314305)