Non-Coding RNA Search

Bra1-PBL_7_E02

Sequence:


               
               TTGCATGCCCCCCATCCCCTTACACCTACCCCCACCTACAGCTGAAGACAATGCCACTTT
ACAGATATTGCCCACACACACCTCGCTTGGGCAGGGCACCCAGCATCAGCCCTGGGGAGA
GGGGCTCCCAGAGGGCCACCACGAGCCTGAGATGTCCTTCCTGAGGCAGAGATGGAAGCC
ATCAGAGCAGGGGCTGGGAGCCAGGATGCCTGAGTCCTTCTGTCCACCAAACTCTCCGCT
GCCTCTCCAGCCCCTTTACAGCCCTGTTTATTTATTATAAATATATTTTTTACCAGCAAA
AAAAAAAAAAAAAACCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATGCCCCCCATCCCCTTACACCTACCCCCACCTACAGCTGAAGACAATGCCACTTT
ACAGATATTGCCCACACACACCTCGCTTGGGCAGGGCACCCAGCATCAGCCCTGGGGAGA
GGGGCTCCCAGAGGGCCACCACGAGCCTGAGATGTCCTTCCTGAGGCAGAGATGGAAGCC
ATCAGAGCAGGGGCTGGGAGCCAGGATGCCTGAGTCCTTCTGTCCACCAAACTCTCCGCT
GCCTCTCCAGCCCCTTTACAGCCCTGTTTATTTATTATAAATATATTTTTTACCAGCAAA
AAAAAAAAAAAAAACCTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               76-297, - strand, RNAz p=0.988358

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-297, - strand, RNAz p=0.988358

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               177-281, - strand, RNAmicro p=0.995649

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-281, - strand, RNAmicro p=0.995649

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               117-293, qy65a07.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE 
(gb|AI356151.1|), blast E-value=0, identity=90.96% 
               

               
               84-293, 602077641F1 NIH_MGC_62 Homo sapiens cDNA clone IMAGE (gb|BF571239.1|), 
blast E-value=0, identity=90.09% 
               

               
               76-293, 603090551F1 NIH_MGC_120 Homo sapiens cDNA clone IMAGE (gb|BI837250.1|), 
blast E-value=0, identity=90.91% 
               

               
               89-293, BovGen_24447 normal cattle brain Bos taurus cDNA clone (gb|CO896122.1|), 
blast E-value=0, identity=95.12% 
               

               
               76-293, 302984 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|EB528397.1|), blast E-value=0, identity=92.2% 
               

               
               107-292, yy02g03.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(gb|N27865.1|), blast E-value=0, identity=89.84%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               117-293, qy65a07.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE 
(gb|AI356151.1|), blast E-value=0, identity=90.96% 
               

               
               84-293, 602077641F1 NIH_MGC_62 Homo sapiens cDNA clone IMAGE (gb|BF571239.1|), 
blast E-value=0, identity=90.09% 
               

               
               76-293, 603090551F1 NIH_MGC_120 Homo sapiens cDNA clone IMAGE (gb|BI837250.1|), 
blast E-value=0, identity=90.91% 
               

               
               89-293, BovGen_24447 normal cattle brain Bos taurus cDNA clone (gb|CO896122.1|), 
blast E-value=0, identity=95.12% 
               

               
               76-293, 302984 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|EB528397.1|), blast E-value=0, identity=92.2% 
               

               
               107-292, yy02g03.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(gb|N27865.1|), blast E-value=0, identity=89.84%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-297, gnl|bosTau2|chr25 (13910650-13910944)
               

               
               1-297, gnl|Hg17|chrX (53145637-53145338)
               

               
               1-297, gnl|Mm7|chrX (146983370-146983661)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr25 (13910650-13910944)
               

               
               1-297, gnl|Hg17|chrX (53145637-53145338)
               

               
               1-297, gnl|Mm7|chrX (146983370-146983661)

	117-293, qy65a07.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE (gb\|AI356151.1\|), blast E-value=0, identity=90.96%
	84-293, 602077641F1 NIH_MGC_62 Homo sapiens cDNA clone IMAGE (gb\|BF571239.1\|), blast E-value=0, identity=90.09%
	76-293, 603090551F1 NIH_MGC_120 Homo sapiens cDNA clone IMAGE (gb\|BI837250.1\|), blast E-value=0, identity=90.91%
	89-293, BovGen_24447 normal cattle brain Bos taurus cDNA clone (gb\|CO896122.1\|), blast E-value=0, identity=95.12%
	76-293, 302984 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb\|EB528397.1\|), blast E-value=0, identity=92.2%
	107-292, yy02g03.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone (gb\|N27865.1\|), blast E-value=0, identity=89.84%

	1-297, gnl\|bosTau2\|chr25 (13910650-13910944)
	1-297, gnl\|Hg17\|chrX (53145637-53145338)
	1-297, gnl\|Mm7\|chrX (146983370-146983661)