Non-Coding RNA Search

Bra1-olf_011_E12

Sequence:


               
               CATCGACAAGGNATTTCGTGAANGCATTAGNATTCTTCTGTGACGTCAGNAGTCCAGTGC
TGTCCATGGTATTCTTGTGCTCCTTCAGTTCAGCACCTTCTAGGTCAAGGCCTTTCCCAT
GAGATCTTTTGGGCAGAGCTGGCGTGTTTAGCAGAGGGGGATTTTCTTTTTCACGTCTAG
GATGGGCCTTTACATCCATCATCTGGTTCATATCGTGATGTTTCTTCTCTTGAGAGAGAC
ACAAGCTGTCGACTTCAAGAAGAAACAGAAGAgagtttccgggtggcctagtggttaagg
atccagtgttgtcactgctgtggctggggttcagtccctgggcctgggaacttccacatg
ccatgggcatggccCCCCAAAAAGAGAAGAAACAGAAGAAAACTATGATCCTCCTGTCTT
TTCTGACCTCAGCCCTCCCTCCTTCCCACTTGCTCCTCAGCATCTCTGCTGCCCCATCTG
GGAGCTCGACCGCAGAAGAGGACTTCTGCTGTTCCATCCTCAGTAGGCAGGTCACTCGGG
ACAGCTGCCAGGCAGAACTGCAGCTGTGCCACCTATGCTGCTGCCAGTCATTGGTCANAC
TGCTCCCTTTCCTGTTTACACCTCATCACTGGATCCTGCTAGGATGCGTANACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCGACAAGGNATTTCGTGAANGCATTAGNATTCTTCTGTGACGTCAGNAGTCCAGTGC
TGTCCATGGTATTCTTGTGCTCCTTCAGTTCAGCACCTTCTAGGTCAAGGCCTTTCCCAT
GAGATCTTTTGGGCAGAGCTGGCGTGTTTAGCAGAGGGGGATTTTCTTTTTCACGTCTAG
GATGGGCCTTTACATCCATCATCTGGTTCATATCGTGATGTTTCTTCTCTTGAGAGAGAC
ACAAGCTGTCGACTTCAAGAAGAAACAGAAGAgagtttccgggtggcctagtggttaagg
atccagtgttgtcactgctgtggctggggttcagtccctgggcctgggaacttccacatg
ccatgggcatggccCCCCAAAAAGAGAAGAAACAGAAGAAAACTATGATCCTCCTGTCTT
TTCTGACCTCAGCCCTCCCTCCTTCCCACTTGCTCCTCAGCATCTCTGCTGCCCCATCTG
GGAGCTCGACCGCAGAAGAGGACTTCTGCTGTTCCATCCTCAGTAGGCAGGTCACTCGGG
ACAGCTGCCAGGCAGAACTGCAGCTGTGCCACCTATGCTGCTGCCAGTCATTGGTCANAC
TGCTCCCTTTCCTGTTTACACCTCATCACTGGATCCTGCTAGGATGCGTANACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               385-580, - strand, RNAz p=0.837595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-580, - strand, RNAz p=0.837595

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-272, gnl|bosTau2|chr3 (75596601-75596868)
               

               
               7-272, gnl|Hg17|chr1 (37157375-37157110)
               

               
               7-272, gnl|Mm7|chr4 (124946231-124946497)
               


               
               385-654, gnl|bosTau2|chr3 (75596854-75597125)
               

               
               385-654, gnl|Hg17|chr1 (37157124-37156863)
               

               
               385-654, gnl|Mm7|chr4 (124946483-124946731)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-272, gnl|bosTau2|chr3 (75596601-75596868)
               

               
               7-272, gnl|Hg17|chr1 (37157375-37157110)
               

               
               7-272, gnl|Mm7|chr4 (124946231-124946497)
               


               
               385-654, gnl|bosTau2|chr3 (75596854-75597125)
               

               
               385-654, gnl|Hg17|chr1 (37157124-37156863)
               

               
               385-654, gnl|Mm7|chr4 (124946483-124946731)

	7-272, gnl\|bosTau2\|chr3 (75596601-75596868)
	7-272, gnl\|Hg17\|chr1 (37157375-37157110)
	7-272, gnl\|Mm7\|chr4 (124946231-124946497)

	385-654, gnl\|bosTau2\|chr3 (75596854-75597125)
	385-654, gnl\|Hg17\|chr1 (37157124-37156863)
	385-654, gnl\|Mm7\|chr4 (124946483-124946731)