Non-Coding RNA Search

Bra1-olf_061_B07

Sequence:


               
               CGCTCCAGCAGGTCTGGGCTTAGATGCTGGACCAGCTGCAGAACTCCTCATTCTGTCTCA
CTTTCTAGCAGTGGGAAGGGTTTGGGCCAGGAGTGGGGAGGGCACTCCGACCCTCTCACT
GTTGGGCTTTGGCTCCTTCTGGACTCTGCCAGGCCAACCCCTACCCCAAGCAGTTGTTGA
CTTGTTGGAGACTTCTGGAGAGGAATGAGACAGCACCCTGGCCCCAGGCCAGCAGCTATA
CCTACCAACCCAGGCCTCCCATAGTCAAGGACGTACTTCCTGCTCCTCCATCCAACTTCC
TGCCCCTCAGCCTTCTCCTCTTCCATTAACGCTTTAGCATCTAAGCCTCCATGCTTAAAA
GCCAGGACAGGAGCAAAATAGGAGAATTAGAGAGCTTACCCCCACCTGTGCCTCGGAAGA
GGGCATGGAAGTCTTGGCTTTTCCACTAGTGGGCAGGGGGTGGTCCCAAACATATCTGTG
CTCAGAGGCAAGCTCTCCCCCCACCCCCCACTCTGCTGAATCCGGTGGCGAGTGATGGCA
TGAGAACTGGCACCAACCCAGGGGCATGATGTCACACCCGCGCCAGCGTCTGCCCGCTGG
GCTCCGCGCCCAGCCTGGCTCTGGGGCCTCACTGCCCCGGCAGCCCCTTGTTCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCCAGCAGGTCTGGGCTTAGATGCTGGACCAGCTGCAGAACTCCTCATTCTGTCTCA
CTTTCTAGCAGTGGGAAGGGTTTGGGCCAGGAGTGGGGAGGGCACTCCGACCCTCTCACT
GTTGGGCTTTGGCTCCTTCTGGACTCTGCCAGGCCAACCCCTACCCCAAGCAGTTGTTGA
CTTGTTGGAGACTTCTGGAGAGGAATGAGACAGCACCCTGGCCCCAGGCCAGCAGCTATA
CCTACCAACCCAGGCCTCCCATAGTCAAGGACGTACTTCCTGCTCCTCCATCCAACTTCC
TGCCCCTCAGCCTTCTCCTCTTCCATTAACGCTTTAGCATCTAAGCCTCCATGCTTAAAA
GCCAGGACAGGAGCAAAATAGGAGAATTAGAGAGCTTACCCCCACCTGTGCCTCGGAAGA
GGGCATGGAAGTCTTGGCTTTTCCACTAGTGGGCAGGGGGTGGTCCCAAACATATCTGTG
CTCAGAGGCAAGCTCTCCCCCCACCCCCCACTCTGCTGAATCCGGTGGCGAGTGATGGCA
TGAGAACTGGCACCAACCCAGGGGCATGATGTCACACCCGCGCCAGCGTCTGCCCGCTGG
GCTCCGCGCCCAGCCTGGCTCTGGGGCCTCACTGCCCCGGCAGCCCCTTGTTCTGCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               89-323, - strand, RNAz p=0.999944
               

               
               357-475, - strand, RNAz p=0.988046
               

               
               539-657, - strand, RNAz p=0.912584

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-323, - strand, RNAz p=0.999944
               

               
               357-475, - strand, RNAz p=0.988046
               

               
               539-657, - strand, RNAz p=0.912584

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               299-451, - strand, RNAmicro p=0.98796

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               299-451, - strand, RNAmicro p=0.98796

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               539-657, AU296165 full-length enriched pig cDNA library, main and accessory 
(dbj|AU296165.1|), blast E-value=0, identity=100% 
               

               
               539-617, DA112518 BRACE3 Homo sapiens cDNA clone BRACE3030428 5', mRNA 
(dbj|DA112518.1|), blast E-value=9e-24, identity=93.67% 
               

               
               539-617, DA313702 BRHIP3 Homo sapiens cDNA clone BRHIP3003320 5', mRNA 
(dbj|DA313702.1|), blast E-value=9e-24, identity=93.67% 
               

               
               539-617, DA774812 OCBBF2 Homo sapiens cDNA clone OCBBF2008601 5', mRNA 
(dbj|DA774812.1|), blast E-value=9e-24, identity=93.67%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               539-657, AU296165 full-length enriched pig cDNA library, main and accessory 
(dbj|AU296165.1|), blast E-value=0, identity=100% 
               

               
               539-617, DA112518 BRACE3 Homo sapiens cDNA clone BRACE3030428 5', mRNA 
(dbj|DA112518.1|), blast E-value=9e-24, identity=93.67% 
               

               
               539-617, DA313702 BRHIP3 Homo sapiens cDNA clone BRHIP3003320 5', mRNA 
(dbj|DA313702.1|), blast E-value=9e-24, identity=93.67% 
               

               
               539-617, DA774812 OCBBF2 Homo sapiens cDNA clone OCBBF2008601 5', mRNA 
(dbj|DA774812.1|), blast E-value=9e-24, identity=93.67%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               89-657, gnl|bosTau2|chr11 (52017044-52017621)
               

               
               89-657, gnl|Hg17|chr2 (27451899-27451309)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-657, gnl|bosTau2|chr11 (52017044-52017621)
               

               
               89-657, gnl|Hg17|chr2 (27451899-27451309)

	89-323, - strand, RNAz p=0.999944
	357-475, - strand, RNAz p=0.988046
	539-657, - strand, RNAz p=0.912584

	539-657, AU296165 full-length enriched pig cDNA library, main and accessory (dbj\|AU296165.1\|), blast E-value=0, identity=100%
	539-617, DA112518 BRACE3 Homo sapiens cDNA clone BRACE3030428 5', mRNA (dbj\|DA112518.1\|), blast E-value=9e-24, identity=93.67%
	539-617, DA313702 BRHIP3 Homo sapiens cDNA clone BRHIP3003320 5', mRNA (dbj\|DA313702.1\|), blast E-value=9e-24, identity=93.67%
	539-617, DA774812 OCBBF2 Homo sapiens cDNA clone OCBBF2008601 5', mRNA (dbj\|DA774812.1\|), blast E-value=9e-24, identity=93.67%

	89-657, gnl\|bosTau2\|chr11 (52017044-52017621)
	89-657, gnl\|Hg17\|chr2 (27451899-27451309)