Non-Coding RNA Search

Bra1-olf_091_F01

Sequence:


               
               TGCAACTCGTGTGCGTTCCTTTGCTCGCGCCTCTCCTCCATTACCTCTCACGTGGCTGAA
GGCTGCCGGGGCGGACGGGGCGGTGGTGGAAAGCGAGGGGCCTCCCAGACCCAGCCTGTT
GTGTCCCCGCTGAGCAGTGGAGACTCTGCTTCCCTGAGCAGTGGGGGTACAGAGCGCAGC
CCTGGTGGCGGGGACACCACTCGGCTTCCAAAGCAGAAGGGGGCCCGCTTCTCCTGCCCC
ACATGTCCCTTTAGCTGCCATCAAGAGCGGGCCCTGAGGACTCACCAGACCCGCGGCTGC
CCCCTCGAGCCGTCGGGAGAGCTGCGCTGTGGCCTCTGCCCCTTCACAGCTCCTGCACCT
GCTGCCCTGCGGCTCCACCAGAAGCGGAGGCACCCCGCCACAGCCGGGGCCCGCGGCCCC
CGGCCCCCGCTTCAGTGTGCGGACTGTGGCTTCACCTGTAAACAGAGCCGGTGCCTNCAG
CAGCACCGGCGGCTCAAGCATGAGGGAGTGAAGCCTNATNAGTGCCTTTNTGTGACTTTT
NCACCACCANACGGTNCCGGTTGGAGGCTCACCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAACTCGTGTGCGTTCCTTTGCTCGCGCCTCTCCTCCATTACCTCTCACGTGGCTGAA
GGCTGCCGGGGCGGACGGGGCGGTGGTGGAAAGCGAGGGGCCTCCCAGACCCAGCCTGTT
GTGTCCCCGCTGAGCAGTGGAGACTCTGCTTCCCTGAGCAGTGGGGGTACAGAGCGCAGC
CCTGGTGGCGGGGACACCACTCGGCTTCCAAAGCAGAAGGGGGCCCGCTTCTCCTGCCCC
ACATGTCCCTTTAGCTGCCATCAAGAGCGGGCCCTGAGGACTCACCAGACCCGCGGCTGC
CCCCTCGAGCCGTCGGGAGAGCTGCGCTGTGGCCTCTGCCCCTTCACAGCTCCTGCACCT
GCTGCCCTGCGGCTCCACCAGAAGCGGAGGCACCCCGCCACAGCCGGGGCCCGCGGCCCC
CGGCCCCCGCTTCAGTGTGCGGACTGTGGCTTCACCTGTAAACAGAGCCGGTGCCTNCAG
CAGCACCGGCGGCTCAAGCATGAGGGAGTGAAGCCTNATNAGTGCCTTTNTGTGACTTTT
NCACCACCANACGGTNCCGGTTGGAGGCTCACCAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-239, - strand, RNAz p=0.998074
               

               
               400-519, - strand, RNAz p=0.762349

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.998074
               

               
               400-519, - strand, RNAz p=0.762349

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               114-259, - strand, RNAmicro p=0.999999
               

               
               62-208, + strand, RNAmicro p=0.999978

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               114-259, - strand, RNAmicro p=0.999999
               

               
               62-208, + strand, RNAmicro p=0.999978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr2 (59483688-59484264)
               

               
               1-576, gnl|Hg17|chr2 (219333662-219333086)
               

               
               1-576, gnl|Mm7|chr1 (74810743-74810170)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr2 (59483688-59484264)
               

               
               1-576, gnl|Hg17|chr2 (219333662-219333086)
               

               
               1-576, gnl|Mm7|chr1 (74810743-74810170)

	80-239, - strand, RNAz p=0.998074
	400-519, - strand, RNAz p=0.762349

	114-259, - strand, RNAmicro p=0.999999
	62-208, + strand, RNAmicro p=0.999978

	1-576, gnl\|bosTau2\|chr2 (59483688-59484264)
	1-576, gnl\|Hg17\|chr2 (219333662-219333086)
	1-576, gnl\|Mm7\|chr1 (74810743-74810170)