Non-Coding RNA Search

Bra1-olf_101_D07

Sequence:


               
               CTCCCGGCCGGTCACTGCCTCCTCCCAGCAGCAGCCCTGCCCCGGGAGCCGGCCCTGGCC
AGCCGGGCAGGCCCCCAGCCAGCGGAGAGCCCGAAGGTCCTGAGCCAGAAACGGAACCGA
TCCCCAAGATGAAGGTGATGGAGAGCCCCCGGGAAGTCCTCCAGGGAGTGCTGCGGGTGC
CCATCAGGATGGAGCCACCAAGGGAGGCGCCGGCAGCCCCAGACGACAGCCGCTCACGGA
GCAGCCTGGGCTCCCTGCCGCTGGGCAAGCCCAGGCCCGGGGCCATCTCACCTCTGAACT
CTCCTCTGGCCACCGCGTTCCCCTCTCCGTTCGGCAAGGAGCCCTTGCCCCCCAGCAGCC
CCCTGCAGAAGGGGGGCTCCTTCTGGAGCTCCATCCCTGCCTCCCCCGCCAGCCGGCCGG
GCTCCTTCACCTTCCCGGGGGACAGTGACTCCCTCCAGCGGCAGGCGCACCGCCACGCGG
CCCCCGGCAAGGACACGGACCGCATGAGCACGTGCTCCTCGGCCAGCGAGCAGTCCGTGC
AGTCCACCCAGAGCAACGGGGTAAGAGCGCCCAGCCGCCTTCGNCCGCCCGGCCCACTGG
CTTTGTCCCGCGGCTCTTCTAAACCTCCCGCGTCGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCGGCCGGTCACTGCCTCCTCCCAGCAGCAGCCCTGCCCCGGGAGCCGGCCCTGGCC
AGCCGGGCAGGCCCCCAGCCAGCGGAGAGCCCGAAGGTCCTGAGCCAGAAACGGAACCGA
TCCCCAAGATGAAGGTGATGGAGAGCCCCCGGGAAGTCCTCCAGGGAGTGCTGCGGGTGC
CCATCAGGATGGAGCCACCAAGGGAGGCGCCGGCAGCCCCAGACGACAGCCGCTCACGGA
GCAGCCTGGGCTCCCTGCCGCTGGGCAAGCCCAGGCCCGGGGCCATCTCACCTCTGAACT
CTCCTCTGGCCACCGCGTTCCCCTCTCCGTTCGGCAAGGAGCCCTTGCCCCCCAGCAGCC
CCCTGCAGAAGGGGGGCTCCTTCTGGAGCTCCATCCCTGCCTCCCCCGCCAGCCGGCCGG
GCTCCTTCACCTTCCCGGGGGACAGTGACTCCCTCCAGCGGCAGGCGCACCGCCACGCGG
CCCCCGGCAAGGACACGGACCGCATGAGCACGTGCTCCTCGGCCAGCGAGCAGTCCGTGC
AGTCCACCCAGAGCAACGGGGTAAGAGCGCCCAGCCGCCTTCGNCCGCCCGGCCCACTGG
CTTTGTCCCGCGGCTCTTCTAAACCTCCCGCGTCGTCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.7767
               

               
               242-475, - strand, RNAz p=0.992944

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.7767
               

               
               242-475, - strand, RNAz p=0.992944

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               340-441, - strand, RNAmicro p=0.965316
               

               
               34-141, - strand, RNAmicro p=0.959775

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               340-441, - strand, RNAmicro p=0.965316
               

               
               34-141, - strand, RNAmicro p=0.959775

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               242-475, AU296429 full-length enriched pig cDNA library, main and accessory 
(dbj|AU296429.1|), blast E-value=0, identity=100% 
               

               
               244-475, BB859411 RIKEN full-length enriched, RCB-1283 B16 melanoma cDNA Mus 
(dbj|BB859411.1|), blast E-value=0, identity=88.36% 
               

               
               245-475, NISC_ls09f06.y1 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|CA334459.1|), blast E-value=0, identity=89.18% 
               

               
               245-475, UI-M-FY0-cft-p-17-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone 
(gb|CD351164.1|), blast E-value=0, identity=88.74% 
               

               
               331-464, 17000532278253 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409092.1|), blast E-value=0, identity=96.27% 
               

               
               286-475, UI-M-HB0-cpc-n-22-0-UI.r1 NIH_BMAP_HB0 Mus musculus cDNA clone 
(gb|CN527341.1|), blast E-value=0, identity=90%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               242-475, AU296429 full-length enriched pig cDNA library, main and accessory 
(dbj|AU296429.1|), blast E-value=0, identity=100% 
               

               
               244-475, BB859411 RIKEN full-length enriched, RCB-1283 B16 melanoma cDNA Mus 
(dbj|BB859411.1|), blast E-value=0, identity=88.36% 
               

               
               245-475, NISC_ls09f06.y1 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|CA334459.1|), blast E-value=0, identity=89.18% 
               

               
               245-475, UI-M-FY0-cft-p-17-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone 
(gb|CD351164.1|), blast E-value=0, identity=88.74% 
               

               
               331-464, 17000532278253 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409092.1|), blast E-value=0, identity=96.27% 
               

               
               286-475, UI-M-HB0-cpc-n-22-0-UI.r1 NIH_BMAP_HB0 Mus musculus cDNA clone 
(gb|CN527341.1|), blast E-value=0, identity=90%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-638, gnl|bosTau2|chr20 (34794293-34794889)
               

               
               3-638, gnl|Hg17|chr5 (14540851-14541438)
               

               
               3-638, gnl|Mm7|chr15 (27851572-27850966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-638, gnl|bosTau2|chr20 (34794293-34794889)
               

               
               3-638, gnl|Hg17|chr5 (14540851-14541438)
               

               
               3-638, gnl|Mm7|chr15 (27851572-27850966)

	3-121, - strand, RNAz p=0.7767
	242-475, - strand, RNAz p=0.992944

	340-441, - strand, RNAmicro p=0.965316
	34-141, - strand, RNAmicro p=0.959775

	242-475, AU296429 full-length enriched pig cDNA library, main and accessory (dbj\|AU296429.1\|), blast E-value=0, identity=100%
	244-475, BB859411 RIKEN full-length enriched, RCB-1283 B16 melanoma cDNA Mus (dbj\|BB859411.1\|), blast E-value=0, identity=88.36%
	245-475, NISC_ls09f06.y1 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone (gb\|CA334459.1\|), blast E-value=0, identity=89.18%
	245-475, UI-M-FY0-cft-p-17-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone (gb\|CD351164.1\|), blast E-value=0, identity=88.74%
	331-464, 17000532278253 GRN_ES Homo sapiens cDNA 5', mRNA sequence (gb\|CN409092.1\|), blast E-value=0, identity=96.27%
	286-475, UI-M-HB0-cpc-n-22-0-UI.r1 NIH_BMAP_HB0 Mus musculus cDNA clone (gb\|CN527341.1\|), blast E-value=0, identity=90%

	3-638, gnl\|bosTau2\|chr20 (34794293-34794889)
	3-638, gnl\|Hg17\|chr5 (14540851-14541438)
	3-638, gnl\|Mm7\|chr15 (27851572-27850966)