Non-Coding RNA Search

Bra1-olf_131_G05

Sequence:


               
               AGGGTGGAGCCGGGNAGCCGGGNAGCCGCAGACCAGACGCTCGGCGCTCGCAGCCATGGG
CTGGGGGTATCGGAGAACTAGTGGGTCGCCGGCACTGGGGCTGCTGCTGCTACTGCGACT
ACCGTGGCAGGTGTGGGGGGCTGAGGCGTTTCGAGGGAACACCGCTGGAGAGCCAGTCAT
CCCGCACTGGGTCCTGGATGGACGACCCCGGCACATGGTCACCCTGGAGGAGCAGGTCTC
GAAGCTAGAAGTGGGGCTTGTGGCCTTGAAGGCTGAAGGCCAGGGGCTGCTCCTCGAGCT
GGAGAAGAACCACAGGCTGCTGGCCCCAGGGTACACGGAAACCCACTACGGCCCAGATCG
GCAGCCAGTGGTGCTGGTCCCCAACCACACGGTGAGATACCTCCATGGGCTTCGAGGACA
GGGTCAAGGGTGCTGGGGGATGCACCCCTGGGGGCCTCTCCACCATTTCCCCCATTCTCC
TCCTGTTCCCCAGGAGAAGTTGGAGCCACCCCACGCCCCCATGCTCTCCCTTGCCCCTNC
CACTCCAGCCCTGGCTGAGGCTTGGGGCTGGGTCTCTTGCTCTCTAGGATCATTGCCACT
ACCATGGGCGTGTGANGGGCTTCCCAGACTCCTGGGTAGTCCTCANCACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTGGAGCCGGGNAGCCGGGNAGCCGCAGACCAGACGCTCGGCGCTCGCAGCCATGGG
CTGGGGGTATCGGAGAACTAGTGGGTCGCCGGCACTGGGGCTGCTGCTGCTACTGCGACT
ACCGTGGCAGGTGTGGGGGGCTGAGGCGTTTCGAGGGAACACCGCTGGAGAGCCAGTCAT
CCCGCACTGGGTCCTGGATGGACGACCCCGGCACATGGTCACCCTGGAGGAGCAGGTCTC
GAAGCTAGAAGTGGGGCTTGTGGCCTTGAAGGCTGAAGGCCAGGGGCTGCTCCTCGAGCT
GGAGAAGAACCACAGGCTGCTGGCCCCAGGGTACACGGAAACCCACTACGGCCCAGATCG
GCAGCCAGTGGTGCTGGTCCCCAACCACACGGTGAGATACCTCCATGGGCTTCGAGGACA
GGGTCAAGGGTGCTGGGGGATGCACCCCTGGGGGCCTCTCCACCATTTCCCCCATTCTCC
TCCTGTTCCCCAGGAGAAGTTGGAGCCACCCCACGCCCCCATGCTCTCCCTTGCCCCTNC
CACTCCAGCCCTGGCTGAGGCTTGGGGCTGGGTCTCTTGCTCTCTAGGATCATTGCCACT
ACCATGGGCGTGTGANGGGCTTCCCAGACTCCTGGGTAGTCCTCANCACCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21755320|dbj|BAC04660.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21755320|dbj|BAC04660.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               445-652, + strand, RNAz p=0.999988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               445-652, + strand, RNAz p=0.999988

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF466287, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF466287, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-156, gnl|bosTau2|chr13 (33669039-33668887)
               

               
               2-156, gnl|canFam2|chr24 (20666300-20665850)
               

               
               2-156, gnl|hg17|chr20 (3610341-3610882)
               

               
               2-156, gnl|Hg17|chr20 (3610703-3610554)
               

               
               2-156, gnl|mm7|chr2 (130804089-130804546)
               

               
               2-156, gnl|Mm7|chr2 (130804417-130804267)
               

               
               2-156, gnl|panTro1|chr21 (3589351-3589892)
               

               
               2-156, gnl|rheMac2|chr10 (37010968-37011511)
               

               
               2-156, gnl|rn3|chr3 (118670028-118670442)
               


               
               445-652, gnl|bosTau2|chr13 (33661631-33661423)
               

               
               445-652, gnl|Hg17|chr20 (3603643-3603432)
               

               
               445-652, gnl|Mm7|chr2 (130797501-130797330)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-156, gnl|bosTau2|chr13 (33669039-33668887)
               

               
               2-156, gnl|canFam2|chr24 (20666300-20665850)
               

               
               2-156, gnl|hg17|chr20 (3610341-3610882)
               

               
               2-156, gnl|Hg17|chr20 (3610703-3610554)
               

               
               2-156, gnl|mm7|chr2 (130804089-130804546)
               

               
               2-156, gnl|Mm7|chr2 (130804417-130804267)
               

               
               2-156, gnl|panTro1|chr21 (3589351-3589892)
               

               
               2-156, gnl|rheMac2|chr10 (37010968-37011511)
               

               
               2-156, gnl|rn3|chr3 (118670028-118670442)
               


               
               445-652, gnl|bosTau2|chr13 (33661631-33661423)
               

               
               445-652, gnl|Hg17|chr20 (3603643-3603432)
               

               
               445-652, gnl|Mm7|chr2 (130797501-130797330)

	2-156, gnl\|bosTau2\|chr13 (33669039-33668887)
	2-156, gnl\|canFam2\|chr24 (20666300-20665850)
	2-156, gnl\|hg17\|chr20 (3610341-3610882)
	2-156, gnl\|Hg17\|chr20 (3610703-3610554)
	2-156, gnl\|mm7\|chr2 (130804089-130804546)
	2-156, gnl\|Mm7\|chr2 (130804417-130804267)
	2-156, gnl\|panTro1\|chr21 (3589351-3589892)
	2-156, gnl\|rheMac2\|chr10 (37010968-37011511)
	2-156, gnl\|rn3\|chr3 (118670028-118670442)

	445-652, gnl\|bosTau2\|chr13 (33661631-33661423)
	445-652, gnl\|Hg17\|chr20 (3603643-3603432)
	445-652, gnl\|Mm7\|chr2 (130797501-130797330)