Non-Coding RNA Search

Bra1-olf_131_H03

Sequence:


               
               GTTGTGTCTGGCTAATTCCCTGGAAAGNAAGGAGGCTAACTGCTGCGGGGACCGGGGNAC
TTTGGTGAGACAAGGTGAGAGGAAAAAAGGGTCCGTATCTTTACGTTCTCCCTCGGACTT
GGCCAGGTAAGAAATACAGTCACCTTGTAGTCCAGACAGCCAGAAAGCAGCGAGTAGGAA
CCTTGCTTGTCTCCCTCTTGCCCCCCTCTTGCCTCACCCTGCTTTGAGCCATCTCGAAGC
CAAGAACAGGGTCGGTTTGGCTTTCTGTATTTCTCCTCCACCCAAGTCTCTGAGGTCCCC
GGATTTCTCGCTCTACAGACCCGGAGAGGGTGAGGGAGGCAAGAAAGGAGAACGTCACTG
GGGAAACGAACTTGCGCCCAGAGCGCTGGAGGCGGTAGACAGGGATCTGTGCGCGACGCC
TCTGCTCTGCGCTCCACGCTGGCGCGATGGCTGCCAAAGGCCAGGGGACAGAGTGCGAGT
GAATATGGGTAGATCTAAGAGCTTCAGAGTAGCGCCTGCTGGCCACCGCTTCCACACCCT
CCAAAGGACCCCACATCTAACGCAACGCGCGCACTCGCACTGCAACCCGGGCAGCGGGTA
GACCGCGGCATCTGGGGAAGTAACAGGTTACCGCTCGGAGTCNCGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTGTCTGGCTAATTCCCTGGAAAGNAAGGAGGCTAACTGCTGCGGGGACCGGGGNAC
TTTGGTGAGACAAGGTGAGAGGAAAAAAGGGTCCGTATCTTTACGTTCTCCCTCGGACTT
GGCCAGGTAAGAAATACAGTCACCTTGTAGTCCAGACAGCCAGAAAGCAGCGAGTAGGAA
CCTTGCTTGTCTCCCTCTTGCCCCCCTCTTGCCTCACCCTGCTTTGAGCCATCTCGAAGC
CAAGAACAGGGTCGGTTTGGCTTTCTGTATTTCTCCTCCACCCAAGTCTCTGAGGTCCCC
GGATTTCTCGCTCTACAGACCCGGAGAGGGTGAGGGAGGCAAGAAAGGAGAACGTCACTG
GGGAAACGAACTTGCGCCCAGAGCGCTGGAGGCGGTAGACAGGGATCTGTGCGCGACGCC
TCTGCTCTGCGCTCCACGCTGGCGCGATGGCTGCCAAAGGCCAGGGGACAGAGTGCGAGT
GAATATGGGTAGATCTAAGAGCTTCAGAGTAGCGCCTGCTGGCCACCGCTTCCACACCCT
CCAAAGGACCCCACATCTAACGCAACGCGCGCACTCGCACTGCAACCCGGGCAGCGGGTA
GACCGCGGCATCTGGGGAAGTAACAGGTTACCGCTCGGAGTCNCGCCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.599893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.599893

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-649, gnl|bosTau2|chr2 (16464508-16465135)
               

               
               1-649, gnl|canFam2|chr36 (18367499-18368620)
               

               
               1-649, gnl|hg17|chr2 (171498699-171499879)
               

               
               1-649, gnl|Hg17|chr2 (171500057-171499416)
               

               
               1-649, gnl|loxAfr1|scaffold_26859 (20695-19534)
               

               
               1-649, gnl|monDom2|scaffold_2 (69445356-69446709)
               

               
               1-649, gnl|oryCun1|scaffold_180641 (198980-197795)
               

               
               1-649, gnl|panTro1|chr13 (61119184-61120355)
               

               
               1-649, gnl|rheMac2|chr12 (34499390-34500575)
               

               
               1-649, gnl|rn3|chr3 (52685490-52686688)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr2 (16464508-16465135)
               

               
               1-649, gnl|canFam2|chr36 (18367499-18368620)
               

               
               1-649, gnl|hg17|chr2 (171498699-171499879)
               

               
               1-649, gnl|Hg17|chr2 (171500057-171499416)
               

               
               1-649, gnl|loxAfr1|scaffold_26859 (20695-19534)
               

               
               1-649, gnl|monDom2|scaffold_2 (69445356-69446709)
               

               
               1-649, gnl|oryCun1|scaffold_180641 (198980-197795)
               

               
               1-649, gnl|panTro1|chr13 (61119184-61120355)
               

               
               1-649, gnl|rheMac2|chr12 (34499390-34500575)
               

               
               1-649, gnl|rn3|chr3 (52685490-52686688)

	1-649, gnl\|bosTau2\|chr2 (16464508-16465135)
	1-649, gnl\|canFam2\|chr36 (18367499-18368620)
	1-649, gnl\|hg17\|chr2 (171498699-171499879)
	1-649, gnl\|Hg17\|chr2 (171500057-171499416)
	1-649, gnl\|loxAfr1\|scaffold_26859 (20695-19534)
	1-649, gnl\|monDom2\|scaffold_2 (69445356-69446709)
	1-649, gnl\|oryCun1\|scaffold_180641 (198980-197795)
	1-649, gnl\|panTro1\|chr13 (61119184-61120355)
	1-649, gnl\|rheMac2\|chr12 (34499390-34500575)
	1-649, gnl\|rn3\|chr3 (52685490-52686688)