Non-Coding RNA Search

CorL-UMC-pd12cl-015-f04

Sequence:


               
               TAATAAAATATTAACAAAGCTAAATCAAATGAGTTTTTAGTTTGGCTATATAGGTGGAAA
GCAATTTTGAGGTCTGTTGCATAAAGAATTCCAGTTCCGTGGTAGAGCAGCAAATAAATG
GGATTGGGGGCAGGGTGATGAAAGGGGTGATAGATAAATCACCCATTATTATATCATTGC
TTCCAGCTGTGGTTCTCCAAGGCCAGCATAGTGGCTTTATCAGATTTCCTAACTGTTGGA
TTTTAAGGTCTGCTTTAAGAAAGACATTTGTACTAATATTAGTGAATAAAGCGGAAAGCT
TTTTGCCCTGTGCTGTGAGCAATTTGTAATAACTAACAATAAGGCCCTGTAATAGTCCAG
TATTGGTTTTTACTTAATAAAATATTTAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAAAATATTAACAAAGCTAAATCAAATGAGTTTTTAGTTTGGCTATATAGGTGGAAA
GCAATTTTGAGGTCTGTTGCATAAAGAATTCCAGTTCCGTGGTAGAGCAGCAAATAAATG
GGATTGGGGGCAGGGTGATGAAAGGGGTGATAGATAAATCACCCATTATTATATCATTGC
TTCCAGCTGTGGTTCTCCAAGGCCAGCATAGTGGCTTTATCAGATTTCCTAACTGTTGGA
TTTTAAGGTCTGCTTTAAGAAAGACATTTGTACTAATATTAGTGAATAAAGCGGAAAGCT
TTTTGCCCTGTGCTGTGAGCAATTTGTAATAACTAACAATAAGGCCCTGTAATAGTCCAG
TATTGGTTTTTACTTAATAAAATATTTAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-238, - strand, RNAz p=0.622347

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-238, - strand, RNAz p=0.622347

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-391, gnl|bosTau2|chr24 (38540070-38540457)
               

               
               1-391, gnl|canFam2|chr7 (47332126-47331242)
               

               
               1-391, gnl|dasNov1|scaffold_27848 (2340-1458)
               

               
               1-391, gnl|echTel1|scaffold_230639 (8037-8919)
               

               
               1-391, gnl|hg17|chr18 (42896674-42897560)
               

               
               1-391, gnl|Hg17|chr18 (42897241-42896857)
               

               
               1-391, gnl|loxAfr1|scaffold_301 (89535-90422)
               

               
               1-391, gnl|mm7|chr18 (77245984-77245246)
               

               
               1-391, gnl|monDom2|scaffold_58 (5807373-5808243)
               

               
               1-391, gnl|oryCun1|scaffold_188714 (9418-10272)
               

               
               1-391, gnl|panTro1|chr17 (39261348-39262234)
               

               
               1-391, gnl|rheMac2|chr18 (40148136-40149017)
               

               
               1-391, gnl|rn3|chr18 (74015585-74014879)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-391, gnl|bosTau2|chr24 (38540070-38540457)
               

               
               1-391, gnl|canFam2|chr7 (47332126-47331242)
               

               
               1-391, gnl|dasNov1|scaffold_27848 (2340-1458)
               

               
               1-391, gnl|echTel1|scaffold_230639 (8037-8919)
               

               
               1-391, gnl|hg17|chr18 (42896674-42897560)
               

               
               1-391, gnl|Hg17|chr18 (42897241-42896857)
               

               
               1-391, gnl|loxAfr1|scaffold_301 (89535-90422)
               

               
               1-391, gnl|mm7|chr18 (77245984-77245246)
               

               
               1-391, gnl|monDom2|scaffold_58 (5807373-5808243)
               

               
               1-391, gnl|oryCun1|scaffold_188714 (9418-10272)
               

               
               1-391, gnl|panTro1|chr17 (39261348-39262234)
               

               
               1-391, gnl|rheMac2|chr18 (40148136-40149017)
               

               
               1-391, gnl|rn3|chr18 (74015585-74014879)

	1-391, gnl\|bosTau2\|chr24 (38540070-38540457)
	1-391, gnl\|canFam2\|chr7 (47332126-47331242)
	1-391, gnl\|dasNov1\|scaffold_27848 (2340-1458)
	1-391, gnl\|echTel1\|scaffold_230639 (8037-8919)
	1-391, gnl\|hg17\|chr18 (42896674-42897560)
	1-391, gnl\|Hg17\|chr18 (42897241-42896857)
	1-391, gnl\|loxAfr1\|scaffold_301 (89535-90422)
	1-391, gnl\|mm7\|chr18 (77245984-77245246)
	1-391, gnl\|monDom2\|scaffold_58 (5807373-5808243)
	1-391, gnl\|oryCun1\|scaffold_188714 (9418-10272)
	1-391, gnl\|panTro1\|chr17 (39261348-39262234)
	1-391, gnl\|rheMac2\|chr18 (40148136-40149017)
	1-391, gnl\|rn3\|chr18 (74015585-74014879)