Non-Coding RNA Search

Emb1-C0005178_A23

Sequence:


               
               GCCCTAGGCAACTGAAAAATACTGGGATGATTTCAGAGTGGGAGGAGCTCAGGAAACTTA
TAGGTTTATTCCTGAGCTCTACACATATGAATCAGAGTGATAACTGCCTATATACTTTGA
GCACTGAACTGTAGTATAAACTAGTTACTTTATAGTGcacacataggacagatcgaaata
gccctgcagaagatttgaaaactgaactggtattggagccacagctcacagaaggcttgt
tggaacttgcagcctgaagctaaccattgtctcctaaaacaaacatgtcagtattctcta
tagaatataaataaaaccaagagtcttataacttaatTGTCAAAATGCCTAGGATACAAT
TCAGAATTAACTGTCACATGAAGAATCAGAAAAATCTCAAGTTGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTAGGCAACTGAAAAATACTGGGATGATTTCAGAGTGGGAGGAGCTCAGGAAACTTA
TAGGTTTATTCCTGAGCTCTACACATATGAATCAGAGTGATAACTGCCTATATACTTTGA
GCACTGAACTGTAGTATAAACTAGTTACTTTATAGTGcacacataggacagatcgaaata
gccctgcagaagatttgaaaactgaactggtattggagccacagctcacagaaggcttgt
tggaacttgcagcctgaagctaaccattgtctcctaaaacaaacatgtcagtattctcta
tagaatataaataaaaccaagagtcttataacttaatTGTCAAAATGCCTAGGATACAAT
TCAGAATTAACTGTCACATGAAGAATCAGAAAAATCTCAAGTTGTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-94, - strand, RNAz p=0.953051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, - strand, RNAz p=0.953051

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               30-119, + strand, RNAmicro p=0.999083

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               30-119, + strand, RNAmicro p=0.999083

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-356, gnl|bosTau2|chr21 (44845610-44845978)
               

               
               1-356, gnl|canFam2|chr23 (37977752-37978193)
               

               
               1-356, gnl|hg17|chr3 (139927472-139927930)
               

               
               1-356, gnl|Hg17|chr3 (139927852-139927471)
               

               
               1-356, gnl|oryCun1|scaffold_182045 (1644-1214)
               

               
               1-356, gnl|panTro1|chr2_random (14104281-14104740)
               

               
               1-356, gnl|rheMac2|chr2 (149087920-149087462)
               

               
               1-356, gnl|rn3|chr8 (103950208-103950557)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-356, gnl|bosTau2|chr21 (44845610-44845978)
               

               
               1-356, gnl|canFam2|chr23 (37977752-37978193)
               

               
               1-356, gnl|hg17|chr3 (139927472-139927930)
               

               
               1-356, gnl|Hg17|chr3 (139927852-139927471)
               

               
               1-356, gnl|oryCun1|scaffold_182045 (1644-1214)
               

               
               1-356, gnl|panTro1|chr2_random (14104281-14104740)
               

               
               1-356, gnl|rheMac2|chr2 (149087920-149087462)
               

               
               1-356, gnl|rn3|chr8 (103950208-103950557)

	1-356, gnl\|bosTau2\|chr21 (44845610-44845978)
	1-356, gnl\|canFam2\|chr23 (37977752-37978193)
	1-356, gnl\|hg17\|chr3 (139927472-139927930)
	1-356, gnl\|Hg17\|chr3 (139927852-139927471)
	1-356, gnl\|oryCun1\|scaffold_182045 (1644-1214)
	1-356, gnl\|panTro1\|chr2_random (14104281-14104740)
	1-356, gnl\|rheMac2\|chr2 (149087920-149087462)
	1-356, gnl\|rn3\|chr8 (103950208-103950557)