Non-Coding RNA Search

Emb1-C0005178_P15

Sequence:


               
               GAATGTCTCTCTGTAGATATATCTGAGTGTCTGGGTAGTTCGAGTCCAAGGCCTTAAGCC
AGGGAAGGGGAGGGCCAGGGCACCAAGGAGCATTTAGGCTAGATGGGGAGTGGGCATATG
CAAGAAAAACTGATCTTAGTAGCTAGGAGGATCAGGCAGTGGGAGGAGGCTGGTTGGTCT
CCCCAGCAACAGGCCTGGCAAACATGATTGGCTGCTGGCTGCCATGGAAGCAGCAGAGCC
TCAGCAGCAGGTAGCCTGAGCCTGGCCTGATGCCTGAGCACAGACTGGGTCTGTGGGCTA
GGACTTGACCATCCATATCCTCCAAACTCAAAACACAGGCCAGCGCTTGTCAGTGTCTCC
TTTTCTTGGCCCCCAGAAGAACTCAGTGCAATCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGTCTCTCTGTAGATATATCTGAGTGTCTGGGTAGTTCGAGTCCAAGGCCTTAAGCC
AGGGAAGGGGAGGGCCAGGGCACCAAGGAGCATTTAGGCTAGATGGGGAGTGGGCATATG
CAAGAAAAACTGATCTTAGTAGCTAGGAGGATCAGGCAGTGGGAGGAGGCTGGTTGGTCT
CCCCAGCAACAGGCCTGGCAAACATGATTGGCTGCTGGCTGCCATGGAAGCAGCAGAGCC
TCAGCAGCAGGTAGCCTGAGCCTGGCCTGATGCCTGAGCACAGACTGGGTCTGTGGGCTA
GGACTTGACCATCCATATCCTCCAAACTCAAAACACAGGCCAGCGCTTGTCAGTGTCTCC
TTTTCTTGGCCCCCAGAAGAACTCAGTGCAATCCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               3-201, - strand, RNAz p=0.978284
               

               
               121-228, + strand, RNAz p=0.62587

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-201, - strand, RNAz p=0.978284
               

               
               121-228, + strand, RNAz p=0.62587

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-252, gnl|bosTau2|chr10 (13606850-13607100)
               

               
               3-252, gnl|canFam2|chr8 (6804277-6804544)
               

               
               3-252, gnl|fr1|chrUn (191593340-191593038)
               

               
               3-252, gnl|hg17|chr14 (23112611-23112894)
               

               
               3-252, gnl|Hg17|chr14 (23112920-23112678)
               

               
               3-252, gnl|loxAfr1|scaffold_68745 (5372-5109)
               

               
               3-252, gnl|mm7|chr14 (49978260-49978547)
               

               
               3-252, gnl|Mm7|chr14 (49978574-49978320)
               

               
               3-252, gnl|monDom2|scaffold_12 (26109796-26109541)
               

               
               3-252, gnl|oryCun1|scaffold_211309 (34405-34138)
               

               
               3-252, gnl|panTro1|chr15 (22082777-22083060)
               

               
               3-252, gnl|rheMac2|chr7 (86412534-86412817)
               

               
               3-252, gnl|rn3|chr15 (33233356-33233625)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-252, gnl|bosTau2|chr10 (13606850-13607100)
               

               
               3-252, gnl|canFam2|chr8 (6804277-6804544)
               

               
               3-252, gnl|fr1|chrUn (191593340-191593038)
               

               
               3-252, gnl|hg17|chr14 (23112611-23112894)
               

               
               3-252, gnl|Hg17|chr14 (23112920-23112678)
               

               
               3-252, gnl|loxAfr1|scaffold_68745 (5372-5109)
               

               
               3-252, gnl|mm7|chr14 (49978260-49978547)
               

               
               3-252, gnl|Mm7|chr14 (49978574-49978320)
               

               
               3-252, gnl|monDom2|scaffold_12 (26109796-26109541)
               

               
               3-252, gnl|oryCun1|scaffold_211309 (34405-34138)
               

               
               3-252, gnl|panTro1|chr15 (22082777-22083060)
               

               
               3-252, gnl|rheMac2|chr7 (86412534-86412817)
               

               
               3-252, gnl|rn3|chr15 (33233356-33233625)

	3-201, - strand, RNAz p=0.978284
	121-228, + strand, RNAz p=0.62587

	3-252, gnl\|bosTau2\|chr10 (13606850-13607100)
	3-252, gnl\|canFam2\|chr8 (6804277-6804544)
	3-252, gnl\|fr1\|chrUn (191593340-191593038)
	3-252, gnl\|hg17\|chr14 (23112611-23112894)
	3-252, gnl\|Hg17\|chr14 (23112920-23112678)
	3-252, gnl\|loxAfr1\|scaffold_68745 (5372-5109)
	3-252, gnl\|mm7\|chr14 (49978260-49978547)
	3-252, gnl\|Mm7\|chr14 (49978574-49978320)
	3-252, gnl\|monDom2\|scaffold_12 (26109796-26109541)
	3-252, gnl\|oryCun1\|scaffold_211309 (34405-34138)
	3-252, gnl\|panTro1\|chr15 (22082777-22083060)
	3-252, gnl\|rheMac2\|chr7 (86412534-86412817)
	3-252, gnl\|rn3\|chr15 (33233356-33233625)