Emb1-C0005180_O22
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCGAGGAAGAAGAAGGTTCTGTGCCAGACTCGTCATACTTAGAAGACATTTGCATATT ATAACCATTGTTTTGTGTGTGCATTTTATTCCTCACTTCTATATATAGTTGACAATAAGT ACTTTTTGGAAATATCTAGGCTTTCTAGATTTTCTGAAGTGCCTGACATATGTTAAAAGT AGAGGTAGTAAAAAGACATCTTTTTGTGTATGATAGAAATATCTTTTTGTTAAAACTCAT ATGAAATATTGTTTATTTGGGGGGAGGGGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCGAGGAAGAAGAAGGTTCTGTGCCAGACTCGTCATACTTAGAAGACATTTGCATATT ATAACCATTGTTTTGTGTGTGCATTTTATTCCTCACTTCTATATATAGTTGACAATAAGT ACTTTTTGGAAATATCTAGGCTTTCTAGATTTTCTGAAGTGCCTGACATATGTTAAAAGT AGAGGTAGTAAAAAGACATCTTTTTGTGTATGATAGAAATATCTTTTTGTTAAAACTCAT ATGAAATATTGTTTATTTGGGGGGAGGGGGGT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 13-170, - strand, RNAz p=0.99524 | |
| 71-214, + strand, RNAz p=0.992423 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 13-170, - strand, RNAz p=0.99524 | |
| 71-214, + strand, RNAz p=0.992423 |
| Similar Transcript(s): 4 entry(ies) | More info |
| Similar Transcript(s): 4 entry(ies) | Help | Less info |
| 116-193, BX352103 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb|BX352103.1|), blast E-value=0.00000000004, identity=87.18% | |
| 116-193, BX399592 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb|BX399592.1|), blast E-value=0.00000000004, identity=87.18% | |
| 74-199, 1154423 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275344.1|), blast E-value=8e-37, identity=91.41% | |
| 71-199, LIB3934-002-Q1-K1-H10 LIB3934 Canis familiaris cDNA clone (gb|DN391377.1|), blast E-value=1e-20, identity=86.67% |
| Similar Transcript(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 116-193, BX352103 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb|BX352103.1|), blast E-value=0.00000000004, identity=87.18% | |
| 116-193, BX399592 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb|BX399592.1|), blast E-value=0.00000000004, identity=87.18% | |
| 74-199, 1154423 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275344.1|), blast E-value=8e-37, identity=91.41% | |
| 71-199, LIB3934-002-Q1-K1-H10 LIB3934 Canis familiaris cDNA clone (gb|DN391377.1|), blast E-value=1e-20, identity=86.67% |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 5-263, gnl|bosTau2|chr13 (44196153-44195906) | |
| 5-263, gnl|canFam2|chr1 (45958689-45960032) | |
| 5-263, gnl|canFam2|chr24 (27866218-27866659) | |
| 5-263, gnl|canFam2|chr24 (27866323-27866701) | |
| 5-263, gnl|canFam2|chr24 (27867129-27866193) | |
| 5-263, gnl|canFam2|chr24 (27866193-27867081) | |
| 5-263, gnl|canFam2|chr24 (27866193-27866732) | |
| 5-263, gnl|dasNov1|scaffold_118215 (5188-4815) | |
| 5-263, gnl|dasNov1|scaffold_143603 (2401-3280) | |
| 5-263, gnl|dasNov1|scaffold_143603 (3280-2770) | |
| 5-263, gnl|dasNov1|scaffold_219488 (303-1618) | |
| 5-263, gnl|dasNov1|scaffold_60408 (3458-3050) | |
| 5-263, gnl|dasNov1|scaffold_60408 (3484-2663) | |
| 5-263, gnl|echTel1|scaffold_235248 (7917-8396) | |
| 5-263, gnl|echTel1|scaffold_235248 (8048-8435) | |
| 5-263, gnl|echTel1|scaffold_235248 (8839-7895) | |
| 5-263, gnl|echTel1|scaffold_315362 (45529-46856) | |
| 5-263, gnl|echTel1|scaffold_315362 (46030-45188) | |
| 5-263, gnl|echTel1|scaffold_315362 (46030-45504) | |
| 5-263, gnl|hg17|chr13 (42419124-42419517) | |
| 5-263, gnl|hg17|chr17 (30741723-30742206) | |
| 5-263, gnl|hg17|chr20 (34100701-34101546) | |
| 5-263, gnl|Hg17|chr20 (34101254-34101009) | |
| 5-263, gnl|hg17|chr5 (25225306-25225829) | |
| 5-263, gnl|hg17|chr7 (23019457-23020340) | |
| 5-263, gnl|hg17|chr7 (24945217-24946462) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9301-8838) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9218-8799) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (8385-9327) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (8800-10145) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9327-8437) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9327-8768) | |
| 5-263, gnl|mm7|chr15 (89850039-89849696) | |
| 5-263, gnl|mm7|chr2 (156133224-156132362) | |
| 5-263, gnl|mm7|chr2 (156132371-156133197) | |
| 5-263, gnl|mm7|chr2 (156132371-156132901) | |
| 5-263, gnl|Mm7|chr2 (156132925-156132640) | |
| 5-263, gnl|mm7|chr6 (117747785-117748979) | |
| 5-263, gnl|mm7|chrX (57326887-57327287) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5162-4720) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5079-4683) | |
| 5-263, gnl|oryCun1|scaffold_85224 (4298-5188) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5188-4669) | |
| 5-263, gnl|oryCun1|scaffold_91216 (5546-4717) | |
| 5-263, gnl|oryCun1|scaffold_92400 (3384-4725) | |
| 5-263, gnl|panTro1|chr14 (42119300-42119683) | |
| 5-263, gnl|panTro1|chr19 (34264036-34264519) | |
| 5-263, gnl|panTro1|chr21 (36321918-36322763) | |
| 5-263, gnl|panTro1|chr4 (92208619-92208089) | |
| 5-263, gnl|panTro1|chr6 (24090234-24091117) | |
| 5-263, gnl|panTro1|chr6 (26082705-26083950) | |
| 5-263, gnl|rheMac2|chr10 (28470766-28469929) | |
| 5-263, gnl|rheMac2|chr10 (28470766-28470237) | |
| 5-263, gnl|rheMac2|chr16 (30665668-30666156) | |
| 5-263, gnl|rheMac2|chr17 (21862468-21862869) | |
| 5-263, gnl|rheMac2|chr3 (103043373-103042496) | |
| 5-263, gnl|rheMac2|chr3 (101129096-101127818) | |
| 5-263, gnl|rn3|chr3 (146698140-146698584) | |
| 5-263, gnl|rn3|chr3 (146699073-146698150) | |
| 5-263, gnl|rn3|chr3 (146698150-146699031) | |
| 5-263, gnl|rn3|chr3 (146698150-146698740) | |
| 5-263, gnl|rn3|chr4 (166004280-166004620) | |
| 5-263, gnl|rn3|chr4 (166005086-166003936) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-263, gnl|bosTau2|chr13 (44196153-44195906) | |
| 5-263, gnl|canFam2|chr1 (45958689-45960032) | |
| 5-263, gnl|canFam2|chr24 (27866218-27866659) | |
| 5-263, gnl|canFam2|chr24 (27866323-27866701) | |
| 5-263, gnl|canFam2|chr24 (27867129-27866193) | |
| 5-263, gnl|canFam2|chr24 (27866193-27867081) | |
| 5-263, gnl|canFam2|chr24 (27866193-27866732) | |
| 5-263, gnl|dasNov1|scaffold_118215 (5188-4815) | |
| 5-263, gnl|dasNov1|scaffold_143603 (2401-3280) | |
| 5-263, gnl|dasNov1|scaffold_143603 (3280-2770) | |
| 5-263, gnl|dasNov1|scaffold_219488 (303-1618) | |
| 5-263, gnl|dasNov1|scaffold_60408 (3458-3050) | |
| 5-263, gnl|dasNov1|scaffold_60408 (3484-2663) | |
| 5-263, gnl|echTel1|scaffold_235248 (7917-8396) | |
| 5-263, gnl|echTel1|scaffold_235248 (8048-8435) | |
| 5-263, gnl|echTel1|scaffold_235248 (8839-7895) | |
| 5-263, gnl|echTel1|scaffold_315362 (45529-46856) | |
| 5-263, gnl|echTel1|scaffold_315362 (46030-45188) | |
| 5-263, gnl|echTel1|scaffold_315362 (46030-45504) | |
| 5-263, gnl|hg17|chr13 (42419124-42419517) | |
| 5-263, gnl|hg17|chr17 (30741723-30742206) | |
| 5-263, gnl|hg17|chr20 (34100701-34101546) | |
| 5-263, gnl|Hg17|chr20 (34101254-34101009) | |
| 5-263, gnl|hg17|chr5 (25225306-25225829) | |
| 5-263, gnl|hg17|chr7 (23019457-23020340) | |
| 5-263, gnl|hg17|chr7 (24945217-24946462) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9301-8838) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9218-8799) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (8385-9327) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (8800-10145) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9327-8437) | |
| 5-263, gnl|loxAfr1|scaffold_35470 (9327-8768) | |
| 5-263, gnl|mm7|chr15 (89850039-89849696) | |
| 5-263, gnl|mm7|chr2 (156133224-156132362) | |
| 5-263, gnl|mm7|chr2 (156132371-156133197) | |
| 5-263, gnl|mm7|chr2 (156132371-156132901) | |
| 5-263, gnl|Mm7|chr2 (156132925-156132640) | |
| 5-263, gnl|mm7|chr6 (117747785-117748979) | |
| 5-263, gnl|mm7|chrX (57326887-57327287) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5162-4720) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5079-4683) | |
| 5-263, gnl|oryCun1|scaffold_85224 (4298-5188) | |
| 5-263, gnl|oryCun1|scaffold_85224 (5188-4669) | |
| 5-263, gnl|oryCun1|scaffold_91216 (5546-4717) | |
| 5-263, gnl|oryCun1|scaffold_92400 (3384-4725) | |
| 5-263, gnl|panTro1|chr14 (42119300-42119683) | |
| 5-263, gnl|panTro1|chr19 (34264036-34264519) | |
| 5-263, gnl|panTro1|chr21 (36321918-36322763) | |
| 5-263, gnl|panTro1|chr4 (92208619-92208089) | |
| 5-263, gnl|panTro1|chr6 (24090234-24091117) | |
| 5-263, gnl|panTro1|chr6 (26082705-26083950) | |
| 5-263, gnl|rheMac2|chr10 (28470766-28469929) | |
| 5-263, gnl|rheMac2|chr10 (28470766-28470237) | |
| 5-263, gnl|rheMac2|chr16 (30665668-30666156) | |
| 5-263, gnl|rheMac2|chr17 (21862468-21862869) | |
| 5-263, gnl|rheMac2|chr3 (103043373-103042496) | |
| 5-263, gnl|rheMac2|chr3 (101129096-101127818) | |
| 5-263, gnl|rn3|chr3 (146698140-146698584) | |
| 5-263, gnl|rn3|chr3 (146699073-146698150) | |
| 5-263, gnl|rn3|chr3 (146698150-146699031) | |
| 5-263, gnl|rn3|chr3 (146698150-146698740) | |
| 5-263, gnl|rn3|chr4 (166004280-166004620) | |
| 5-263, gnl|rn3|chr4 (166005086-166003936) |