Non-Coding RNA Search

Emb1-C0005183_P08

Sequence:


               
               CTGTATACTGTGTGTGATGTTGCCATGAATATCATCATGTCAAAAAGCACCACATATAGT
TTGGAATCTCCTAAAGACCCAGTACTGCCAGCTCGTTTTTTCACCCAACCTGACAAGAAC
TTCAGTAACACCAAAAATTATCTGCCTCCAGAAATGAAATCGTTTTTTACTCCTGGAAAA
CCTAAAACAACCAATGTTCTAGGAGCTGTTAATAGCCGCTTTCATCAGCAGGGCAAACAT
CTCAGACAAATCATCACGAATGGGAACTGTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTATACTGTGTGTGATGTTGCCATGAATATCATCATGTCAAAAAGCACCACATATAGT
TTGGAATCTCCTAAAGACCCAGTACTGCCAGCTCGTTTTTTCACCCAACCTGACAAGAAC
TTCAGTAACACCAAAAATTATCTGCCTCCAGAAATGAAATCGTTTTTTACTCCTGGAAAA
CCTAAAACAACCAATGTTCTAGGAGCTGTTAATAGCCGCTTTCATCAGCAGGGCAAACAT
CTCAGACAAATCATCACGAATGGGAACTGTAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-117, - strand, RNAz p=0.553205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.553205

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-117, gnl|bosTau2|chr11 (44215862-44215746)
               

               
               1-117, gnl|canFam2|chr25 (10409760-10409633)
               

               
               1-117, gnl|danRer3|chr15 (33134649-33134776)
               

               
               1-117, gnl|dasNov1|scaffold_45814 (7199-7326)
               

               
               1-117, gnl|echTel1|scaffold_300687 (3662-3535)
               

               
               1-117, gnl|fr1|chrUn (234025195-234025068)
               

               
               1-117, gnl|galGal2|chr1 (166445898-166445773)
               

               
               1-117, gnl|hg17|chr13 (32230671-32230798)
               

               
               1-117, gnl|Hg17|chr13 (32230675-32230791)
               

               
               1-117, gnl|loxAfr1|scaffold_1565 (1182-1055)
               

               
               1-117, gnl|mm7|chr5 (149725651-149725778)
               

               
               1-117, gnl|Mm7|chr5 (149725655-149725771)
               

               
               1-117, gnl|monDom2|scaffold_15 (43246742-43246869)
               

               
               1-117, gnl|oryCun1|scaffold_203373 (44232-44105)
               

               
               1-117, gnl|panTro1|chr14 (31424786-31424913)
               

               
               1-117, gnl|rheMac2|chr17 (12121485-12121612)
               

               
               1-117, gnl|rn3|chr12 (4052389-4052262)
               

               
               1-117, gnl|tetNig1|chr7 (2467239-2467364)
               

               
               1-117, gnl|xenTro1|scaffold_384 (974103-973976)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-117, gnl|bosTau2|chr11 (44215862-44215746)
               

               
               1-117, gnl|canFam2|chr25 (10409760-10409633)
               

               
               1-117, gnl|danRer3|chr15 (33134649-33134776)
               

               
               1-117, gnl|dasNov1|scaffold_45814 (7199-7326)
               

               
               1-117, gnl|echTel1|scaffold_300687 (3662-3535)
               

               
               1-117, gnl|fr1|chrUn (234025195-234025068)
               

               
               1-117, gnl|galGal2|chr1 (166445898-166445773)
               

               
               1-117, gnl|hg17|chr13 (32230671-32230798)
               

               
               1-117, gnl|Hg17|chr13 (32230675-32230791)
               

               
               1-117, gnl|loxAfr1|scaffold_1565 (1182-1055)
               

               
               1-117, gnl|mm7|chr5 (149725651-149725778)
               

               
               1-117, gnl|Mm7|chr5 (149725655-149725771)
               

               
               1-117, gnl|monDom2|scaffold_15 (43246742-43246869)
               

               
               1-117, gnl|oryCun1|scaffold_203373 (44232-44105)
               

               
               1-117, gnl|panTro1|chr14 (31424786-31424913)
               

               
               1-117, gnl|rheMac2|chr17 (12121485-12121612)
               

               
               1-117, gnl|rn3|chr12 (4052389-4052262)
               

               
               1-117, gnl|tetNig1|chr7 (2467239-2467364)
               

               
               1-117, gnl|xenTro1|scaffold_384 (974103-973976)

	1-117, gnl\|bosTau2\|chr11 (44215862-44215746)
	1-117, gnl\|canFam2\|chr25 (10409760-10409633)
	1-117, gnl\|danRer3\|chr15 (33134649-33134776)
	1-117, gnl\|dasNov1\|scaffold_45814 (7199-7326)
	1-117, gnl\|echTel1\|scaffold_300687 (3662-3535)
	1-117, gnl\|fr1\|chrUn (234025195-234025068)
	1-117, gnl\|galGal2\|chr1 (166445898-166445773)
	1-117, gnl\|hg17\|chr13 (32230671-32230798)
	1-117, gnl\|Hg17\|chr13 (32230675-32230791)
	1-117, gnl\|loxAfr1\|scaffold_1565 (1182-1055)
	1-117, gnl\|mm7\|chr5 (149725651-149725778)
	1-117, gnl\|Mm7\|chr5 (149725655-149725771)
	1-117, gnl\|monDom2\|scaffold_15 (43246742-43246869)
	1-117, gnl\|oryCun1\|scaffold_203373 (44232-44105)
	1-117, gnl\|panTro1\|chr14 (31424786-31424913)
	1-117, gnl\|rheMac2\|chr17 (12121485-12121612)
	1-117, gnl\|rn3\|chr12 (4052389-4052262)
	1-117, gnl\|tetNig1\|chr7 (2467239-2467364)
	1-117, gnl\|xenTro1\|scaffold_384 (974103-973976)