Non-Coding RNA Search

Emb1-C0005185_C19

Sequence:


               
               GTTCAAGGGTGTTTTTACATTAAAAAGGGATGTTTGGTTGCTTCTGGAAAATATACCACA
TTAATAGGAAAACATGTTAGACTAAACAGTTTATTACTGTGAAGTGAGTGAAAAATATAG
ATAGTACTTTAACTCTTCCTCGAAAAACTAGAGTGGCATTTTAAAGAGAATATGGGAGGC
CCAGGTAGATGCCTTCCAATCGGAGGCTTGTTGGGATTCCAAGAGGTGGTTTCAAATACA
AAAATAAGTGCTTGGGTTTCCCTTGGCGTCCCCAAGGAGATTTTAAGCCACGATGCAATG
TTCGAATGAGAGTGGTATTTTTATGACTTAGGCAGGTAAATATACAATTTGAAAATATTC
AGGGGAGGGTGATTTGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAAGGGTGTTTTTACATTAAAAAGGGATGTTTGGTTGCTTCTGGAAAATATACCACA
TTAATAGGAAAACATGTTAGACTAAACAGTTTATTACTGTGAAGTGAGTGAAAAATATAG
ATAGTACTTTAACTCTTCCTCGAAAAACTAGAGTGGCATTTTAAAGAGAATATGGGAGGC
CCAGGTAGATGCCTTCCAATCGGAGGCTTGTTGGGATTCCAAGAGGTGGTTTCAAATACA
AAAATAAGTGCTTGGGTTTCCCTTGGCGTCCCCAAGGAGATTTTAAGCCACGATGCAATG
TTCGAATGAGAGTGGTATTTTTATGACTTAGGCAGGTAAATATACAATTTGAAAATATTC
AGGGGAGGGTGATTTGGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               162-315, + strand, RNAz p=0.958672

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-315, + strand, RNAz p=0.958672

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-380, gnl|bosTau2|chr3 (1178367-1177997)
               

               
               7-380, gnl|Hg17|chr8 (13032335-13031960)
               

               
               7-380, gnl|Mm7|chr8 (35378226-35377893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-380, gnl|bosTau2|chr3 (1178367-1177997)
               

               
               7-380, gnl|Hg17|chr8 (13032335-13031960)
               

               
               7-380, gnl|Mm7|chr8 (35378226-35377893)

	7-380, gnl\|bosTau2\|chr3 (1178367-1177997)
	7-380, gnl\|Hg17\|chr8 (13032335-13031960)
	7-380, gnl\|Mm7\|chr8 (35378226-35377893)