Non-Coding RNA Search

Emb1-C0005188_B06

Sequence:


               
               TACGGTGCAGAAGTGATTCCAATATTACAGAAATACTCCGAATGGACAGTGCCAGCTGAG
GACAATTCCCCACGGAGAAGCCCCTCCAGCTGCAGAGGCAGTGGAAGAAACGCCCCCGAG
GAGTTGGATGAGGAAACACTCATATCTTCTCACTACTTTGCAAATAAAACCAAAAATGAA
AGAAAAAGGAAAAGGATACCAGCCTCCCAAAGGTCTAAGAGGAGAAAAACTAGTTTCGGT
GGTTCCAAGGCAAAAGCAAAAGGGGGGTCCGGCACAAGCAGAAGGATATCTTCTAAAACT
AAACCTTCCAACGTATTTGGATCCCGTTCAGCTTTGCTTGGTTCTCAAGCAGCATCAGGA
GCCAGTAGAAAATTGGGGATTATGGCTCCACCAAAGCCTATAAATAGACCGTTTCTTAAG
CCTTCGTATGCATTTTCATAACAACCAAATCTCAACATACATAGATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGGTGCAGAAGTGATTCCAATATTACAGAAATACTCCGAATGGACAGTGCCAGCTGAG
GACAATTCCCCACGGAGAAGCCCCTCCAGCTGCAGAGGCAGTGGAAGAAACGCCCCCGAG
GAGTTGGATGAGGAAACACTCATATCTTCTCACTACTTTGCAAATAAAACCAAAAATGAA
AGAAAAAGGAAAAGGATACCAGCCTCCCAAAGGTCTAAGAGGAGAAAAACTAGTTTCGGT
GGTTCCAAGGCAAAAGCAAAAGGGGGGTCCGGCACAAGCAGAAGGATATCTTCTAAAACT
AAACCTTCCAACGTATTTGGATCCCGTTCAGCTTTGCTTGGTTCTCAAGCAGCATCAGGA
GCCAGTAGAAAATTGGGGATTATGGCTCCACCAAAGCCTATAAATAGACCGTTTCTTAAG
CCTTCGTATGCATTTTCATAACAACCAAATCTCAACATACATAGATCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               54-172, - strand, RNAz p=0.610849

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-172, - strand, RNAz p=0.610849

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               54-256, gnl|bosTau2|chr21 (12240986-12240784)
               

               
               54-256, gnl|canFam2|chr3 (56272816-56272684)
               

               
               54-256, gnl|dasNov1|scaffold_13098 (17843-17711)
               

               
               54-256, gnl|echTel1|scaffold_294975 (12474-12609)
               

               
               54-256, gnl|galGal2|chr10 (20522241-20522109)
               

               
               54-256, gnl|hg17|chr15 (89155429-89155561)
               

               
               54-256, gnl|Hg17|chr15 (89155437-89155639)
               

               
               54-256, gnl|loxAfr1|scaffold_45653 (8436-8568)
               

               
               54-256, gnl|mm7|chr7 (76330451-76330337)
               

               
               54-256, gnl|Mm7|chr7 (76330441-76330257)
               

               
               54-256, gnl|monDom2|scaffold_45 (9774244-9774370)
               

               
               54-256, gnl|oryCun1|scaffold_215042 (50458-50590)
               

               
               54-256, gnl|panTro1|chr16 (90105618-90105750)
               

               
               54-256, gnl|rheMac2|chr7 (70536141-70536273)
               

               
               54-256, gnl|rn3|chr1 (136354665-136354548)
               


               
               263-468, gnl|bosTau2|chr21 (12236879-12236674)
               

               
               263-468, gnl|Hg17|chr15 (89159335-89159540)
               

               
               263-468, gnl|Mm7|chr7 (76326880-76326684)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-256, gnl|bosTau2|chr21 (12240986-12240784)
               

               
               54-256, gnl|canFam2|chr3 (56272816-56272684)
               

               
               54-256, gnl|dasNov1|scaffold_13098 (17843-17711)
               

               
               54-256, gnl|echTel1|scaffold_294975 (12474-12609)
               

               
               54-256, gnl|galGal2|chr10 (20522241-20522109)
               

               
               54-256, gnl|hg17|chr15 (89155429-89155561)
               

               
               54-256, gnl|Hg17|chr15 (89155437-89155639)
               

               
               54-256, gnl|loxAfr1|scaffold_45653 (8436-8568)
               

               
               54-256, gnl|mm7|chr7 (76330451-76330337)
               

               
               54-256, gnl|Mm7|chr7 (76330441-76330257)
               

               
               54-256, gnl|monDom2|scaffold_45 (9774244-9774370)
               

               
               54-256, gnl|oryCun1|scaffold_215042 (50458-50590)
               

               
               54-256, gnl|panTro1|chr16 (90105618-90105750)
               

               
               54-256, gnl|rheMac2|chr7 (70536141-70536273)
               

               
               54-256, gnl|rn3|chr1 (136354665-136354548)
               


               
               263-468, gnl|bosTau2|chr21 (12236879-12236674)
               

               
               263-468, gnl|Hg17|chr15 (89159335-89159540)
               

               
               263-468, gnl|Mm7|chr7 (76326880-76326684)

	54-256, gnl\|bosTau2\|chr21 (12240986-12240784)
	54-256, gnl\|canFam2\|chr3 (56272816-56272684)
	54-256, gnl\|dasNov1\|scaffold_13098 (17843-17711)
	54-256, gnl\|echTel1\|scaffold_294975 (12474-12609)
	54-256, gnl\|galGal2\|chr10 (20522241-20522109)
	54-256, gnl\|hg17\|chr15 (89155429-89155561)
	54-256, gnl\|Hg17\|chr15 (89155437-89155639)
	54-256, gnl\|loxAfr1\|scaffold_45653 (8436-8568)
	54-256, gnl\|mm7\|chr7 (76330451-76330337)
	54-256, gnl\|Mm7\|chr7 (76330441-76330257)
	54-256, gnl\|monDom2\|scaffold_45 (9774244-9774370)
	54-256, gnl\|oryCun1\|scaffold_215042 (50458-50590)
	54-256, gnl\|panTro1\|chr16 (90105618-90105750)
	54-256, gnl\|rheMac2\|chr7 (70536141-70536273)
	54-256, gnl\|rn3\|chr1 (136354665-136354548)

	263-468, gnl\|bosTau2\|chr21 (12236879-12236674)
	263-468, gnl\|Hg17\|chr15 (89159335-89159540)
	263-468, gnl\|Mm7\|chr7 (76326880-76326684)