Non-Coding RNA Search

Emb1-C0005190_O14

Sequence:


               
               CGATTCCACCTCAGTCAGTGCTGTTGCCTCTAATATGAGAGATGATGAAATAACCCAGGA
TGAAAACACAGTTTCCACTTCCCTGGGCCATTCCAAAGATGAGAACTCAAAGCAAACATG
CATCAAAATTGTCACCAAGACCCAAAAAAGTGACTCATGCACTTCCCACTGTTCCTTTAG
TTATAGACCTTAGCAAATCATAACAGGAATGATTACCCAGTGGTGGCTTTACATAGACTC
TTGTCTATATAGAGACTTTTTATTGGCCAATAAATATATGATTATATTGATTCATATTTA
GTTATTTTTACTCCTTGACTTTTTTTTCTTACTGTATTTGCTATAGTCTTCCAATAAGTT
TTTAAAACACGGCCCAATCAGTAGCAATCAAATTTATTAAAACCTTTTTGAAGTTCATAT
GTTGCATTTTAGATGTATGGGCTTTAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATTCCACCTCAGTCAGTGCTGTTGCCTCTAATATGAGAGATGATGAAATAACCCAGGA
TGAAAACACAGTTTCCACTTCCCTGGGCCATTCCAAAGATGAGAACTCAAAGCAAACATG
CATCAAAATTGTCACCAAGACCCAAAAAAGTGACTCATGCACTTCCCACTGTTCCTTTAG
TTATAGACCTTAGCAAATCATAACAGGAATGATTACCCAGTGGTGGCTTTACATAGACTC
TTGTCTATATAGAGACTTTTTATTGGCCAATAAATATATGATTATATTGATTCATATTTA
GTTATTTTTACTCCTTGACTTTTTTTTCTTACTGTATTTGCTATAGTCTTCCAATAAGTT
TTTAAAACACGGCCCAATCAGTAGCAATCAAATTTATTAAAACCTTTTTGAAGTTCATAT
GTTGCATTTTAGATGTATGGGCTTTAGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-162, - strand, RNAz p=0.995897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-162, - strand, RNAz p=0.995897

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-162, gnl|bosTau2|chr4 (55282442-55282282)
               

               
               2-162, gnl|Hg17|chr7 (136157720-136157880)
               

               
               2-162, gnl|Mm7|chr6 (36455648-36455808)
               


               
               237-450, gnl|bosTau2|chr4 (55280311-55280090)
               

               
               237-450, gnl|Hg17|chr7 (136159863-136160059)
               

               
               237-450, gnl|Mm7|chr6 (36457753-36457938)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-162, gnl|bosTau2|chr4 (55282442-55282282)
               

               
               2-162, gnl|Hg17|chr7 (136157720-136157880)
               

               
               2-162, gnl|Mm7|chr6 (36455648-36455808)
               


               
               237-450, gnl|bosTau2|chr4 (55280311-55280090)
               

               
               237-450, gnl|Hg17|chr7 (136159863-136160059)
               

               
               237-450, gnl|Mm7|chr6 (36457753-36457938)

	2-162, gnl\|bosTau2\|chr4 (55282442-55282282)
	2-162, gnl\|Hg17\|chr7 (136157720-136157880)
	2-162, gnl\|Mm7\|chr6 (36455648-36455808)

	237-450, gnl\|bosTau2\|chr4 (55280311-55280090)
	237-450, gnl\|Hg17\|chr7 (136159863-136160059)
	237-450, gnl\|Mm7\|chr6 (36457753-36457938)