Non-Coding RNA Search

Emb1-C0005191_H06

Sequence:


               
               GATTCTTATAAAAAGAGTGACTCTAGGAAAAGACCCTATTCTTCCTTTAGTAATGGTAAA
GATCATCGTGATTGGGATCACTACAAGCAAGACAGCAGATATTACAGTGATAGAGAGAAA
CACAGAAAACTGGATGATCACAGGAGTAGAGACCACAGGTCCAGTTTGGAAGGAAGTTTA
AAAGACAGAACTCATTCTGATCATCGTTCTCATTCAGATCATCGGTTACATTCAGACCAT
CGGTCAAGTTCTGAATATACACACCATAAATCTTCCAGGGATTATAGGTATCATTCAGAT
TGGCAAATGGACCACAGAGCTTCCAGTAGTGGCCCTAGATCACCACTAGATCAGAGGTCT
CCTTATGGCTCCAGATCTCCCTTTGAACACTCAATTGAACACAAAAATACACCTGAGCAT
ACCTGGAGTAGTCGGAAAACATAACAAAAACTGATACTGTCTTTCTGGATTTTTCTTTTA
GCCATATATCATAAACCAACACAGTAATTGCCTTACATGACTTGAAAGATATAAACAGAT
CTTCTATCAGTAGCAGTATTGTTACTTCTTTCCAGGATGCAAGGTCTATTATCCAAACAG
AAGAGAAAATATTTTTATATTTAAGGATTATGCTGCACTGTACTACAAATATTGTAGTAC
TTTTTTTTTTTTTCTTTTTTTAAGAAATGGAAAATGTTTACTATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCTTATAAAAAGAGTGACTCTAGGAAAAGACCCTATTCTTCCTTTAGTAATGGTAAA
GATCATCGTGATTGGGATCACTACAAGCAAGACAGCAGATATTACAGTGATAGAGAGAAA
CACAGAAAACTGGATGATCACAGGAGTAGAGACCACAGGTCCAGTTTGGAAGGAAGTTTA
AAAGACAGAACTCATTCTGATCATCGTTCTCATTCAGATCATCGGTTACATTCAGACCAT
CGGTCAAGTTCTGAATATACACACCATAAATCTTCCAGGGATTATAGGTATCATTCAGAT
TGGCAAATGGACCACAGAGCTTCCAGTAGTGGCCCTAGATCACCACTAGATCAGAGGTCT
CCTTATGGCTCCAGATCTCCCTTTGAACACTCAATTGAACACAAAAATACACCTGAGCAT
ACCTGGAGTAGTCGGAAAACATAACAAAAACTGATACTGTCTTTCTGGATTTTTCTTTTA
GCCATATATCATAAACCAACACAGTAATTGCCTTACATGACTTGAAAGATATAAACAGAT
CTTCTATCAGTAGCAGTATTGTTACTTCTTTCCAGGATGCAAGGTCTATTATCCAAACAG
AAGAGAAAATATTTTTATATTTAAGGATTATGCTGCACTGTACTACAAATATTGTAGTAC
TTTTTTTTTTTTTCTTTTTTTAAGAAATGGAAAATGTTTACTATTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               573-692, + strand, RNAz p=0.74945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               573-692, + strand, RNAz p=0.74945

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               97-707, gnl|bosTau2|chr7 (60568195-60567588)
               

               
               97-707, gnl|Hg17|chr5 (98220331-98219720)
               

               
               97-707, gnl|Mm7|chr17 (14006755-14007363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-707, gnl|bosTau2|chr7 (60568195-60567588)
               

               
               97-707, gnl|Hg17|chr5 (98220331-98219720)
               

               
               97-707, gnl|Mm7|chr17 (14006755-14007363)

	97-707, gnl\|bosTau2\|chr7 (60568195-60567588)
	97-707, gnl\|Hg17\|chr5 (98220331-98219720)
	97-707, gnl\|Mm7\|chr17 (14006755-14007363)