Non-Coding RNA Search

Emb1-C0005191_I17

Sequence:


               
               GCtttttttttttttttttttttttttttttttttttttttttttttttttttttttttt
tttACCAAAAAAATCTTTTTTTAGGTTTGGGCCGTACAGGGAAAAAATACTGGGGTCCCC
AAACATATGCCTTAACCGGATACCACCGTTCAAAAAAACTGGGTAACTATGCCCCCCAAT
TTCTTTAACTAACATTCCCCCCCCCAAAAAAAAAATGCCCCAATGTTTAGGGGAAAAAAC
TGGTTCTAACACTGAAACTACTATAGGACTGCCTCCACAAGTCCCACTTTTAGGGATAAA
ACTACTGGACTGGGGAAACCCGGCAGTCATAAACCCCCCTCTACCCTAACCCCTCTGAAA
TGGGGCAAAAATACCGTAACCCCATGGGTAAAAACCCCCTCCCCAGCCCACCTTCCAGGG
GAAACCCCAATTTATACCAACCTCCGTATGTTATACTTTAAGGAAAAATTTCCCTTTACA
ACTTCCCCTTAACCCCTATAAAAATAACCCGACCCCACCCAAAATGGCCTTTTAACAACC
TTCAAAGTAATTAACTGTTACAATTTCCCCAGTGGCAAAAGTCTTAAAGCAAAAAAAGAA
AAGTCCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCtttttttttttttttttttttttttttttttttttttttttttttttttttttttttt
tttACCAAAAAAATCTTTTTTTAGGTTTGGGCCGTACAGGGAAAAAATACTGGGGTCCCC
AAACATATGCCTTAACCGGATACCACCGTTCAAAAAAACTGGGTAACTATGCCCCCCAAT
TTCTTTAACTAACATTCCCCCCCCCAAAAAAAAAATGCCCCAATGTTTAGGGGAAAAAAC
TGGTTCTAACACTGAAACTACTATAGGACTGCCTCCACAAGTCCCACTTTTAGGGATAAA
ACTACTGGACTGGGGAAACCCGGCAGTCATAAACCCCCCTCTACCCTAACCCCTCTGAAA
TGGGGCAAAAATACCGTAACCCCATGGGTAAAAACCCCCTCCCCAGCCCACCTTCCAGGG
GAAACCCCAATTTATACCAACCTCCGTATGTTATACTTTAAGGAAAAATTTCCCTTTACA
ACTTCCCCTTAACCCCTATAAAAATAACCCGACCCCACCCAAAATGGCCTTTTAACAACC
TTCAAAGTAATTAACTGTTACAATTTCCCCAGTGGCAAAAGTCTTAAAGCAAAAAAAGAA
AAGTCCAAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               238-357, - strand, RNAz p=0.557135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-357, - strand, RNAz p=0.557135

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-602, gnl|bosTau2|chr23 (24517845-24518403)
               

               
               40-602, gnl|Hg17|chr6 (160147762-160147223)
               

               
               40-602, gnl|Mm7|chr17 (11795309-11794766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-602, gnl|bosTau2|chr23 (24517845-24518403)
               

               
               40-602, gnl|Hg17|chr6 (160147762-160147223)
               

               
               40-602, gnl|Mm7|chr17 (11795309-11794766)

	40-602, gnl\|bosTau2\|chr23 (24517845-24518403)
	40-602, gnl\|Hg17\|chr6 (160147762-160147223)
	40-602, gnl\|Mm7\|chr17 (11795309-11794766)