Non-Coding RNA Search

Emb1-C0005191_J10

Sequence:


               
               CAGTTGCAAAACTCCTGAGCACAACAACACCCCCAATTTTGCCAATGGTGTCCTGGCTAA
GAATGGTGGTATATCTCAGAGGATAGCAGATGGCCACGTAGCGGTCAAAAGCCATGGCCA
AGAGAATGCCTGACTCTACTACAAAGGCAAAATGCATAAAGAAGAGCTGGGTCACAGCCA
CCAAAGGAGATGTCCGTGTCATCAAACCAGAAGATACTCAGGGCTTTGGGGACTGTGGCT
GTGGATAGAATCAGATCCCAAAATGCCAGCATGGAGAGGAAGAGGTACACACGCTCCACT
GCCACCACACAGATCAGGACAGCATTTGCTGGCACGGCCACCAGGTACATCAGGCAGAAA
GGGATGGGATCCATGTGTGTAGCTCCTTCAGGCCAGGTAGACCAATGAGGATAAACGTGT
CATAAGTGACAGTGGAGTCGTTGGGAGCTGCCATGCCTGGATTACGGTAGGGAACTTTCA
TCACTCATCTGGAAGGAGAAAGAAAGTTGGAGAGCCAGCCTGTCACAACCAACTGGCATA
CCTTCAATGACCTCAACAGGCTCATTAATGGTTAATGAGCATGTATTCAATAACCCTCAG
TGGGTTTAGACATCCACCATGCAAAATTCCAGTTAGCGAATTCCCACATACTCAGAGTGT
CAGTTACGGACCTACATGTGTGTGGTATTCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTGCAAAACTCCTGAGCACAACAACACCCCCAATTTTGCCAATGGTGTCCTGGCTAA
GAATGGTGGTATATCTCAGAGGATAGCAGATGGCCACGTAGCGGTCAAAAGCCATGGCCA
AGAGAATGCCTGACTCTACTACAAAGGCAAAATGCATAAAGAAGAGCTGGGTCACAGCCA
CCAAAGGAGATGTCCGTGTCATCAAACCAGAAGATACTCAGGGCTTTGGGGACTGTGGCT
GTGGATAGAATCAGATCCCAAAATGCCAGCATGGAGAGGAAGAGGTACACACGCTCCACT
GCCACCACACAGATCAGGACAGCATTTGCTGGCACGGCCACCAGGTACATCAGGCAGAAA
GGGATGGGATCCATGTGTGTAGCTCCTTCAGGCCAGGTAGACCAATGAGGATAAACGTGT
CATAAGTGACAGTGGAGTCGTTGGGAGCTGCCATGCCTGGATTACGGTAGGGAACTTTCA
TCACTCATCTGGAAGGAGAAAGAAAGTTGGAGAGCCAGCCTGTCACAACCAACTGGCATA
CCTTCAATGACCTCAACAGGCTCATTAATGGTTAATGAGCATGTATTCAATAACCCTCAG
TGGGTTTAGACATCCACCATGCAAAATTCCAGTTAGCGAATTCCCACATACTCAGAGTGT
CAGTTACGGACCTACATGTGTGTGGTATTCTGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               73-190, + strand, RNAz p=0.957852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-190, + strand, RNAz p=0.957852

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-415, gnl|bosTau2|chr15 (31147032-31146633)
               

               
               34-415, gnl|Hg17|chr11 (5529974-5530369)
               

               
               34-415, gnl|Mm7|chr7 (100246156-100246555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-415, gnl|bosTau2|chr15 (31147032-31146633)
               

               
               34-415, gnl|Hg17|chr11 (5529974-5530369)
               

               
               34-415, gnl|Mm7|chr7 (100246156-100246555)

	34-415, gnl\|bosTau2\|chr15 (31147032-31146633)
	34-415, gnl\|Hg17\|chr11 (5529974-5530369)
	34-415, gnl\|Mm7\|chr7 (100246156-100246555)