Non-Coding RNA Search

Emb1-C0005192_M16

Sequence:


               
               GGAAAAGGGAGAAGTGGAGGTTTTGGAGAGTTGTAAAGTCTCCAGCAATGGAGCCCCGGA
CCAAGAGGCTTCTGAGCAGTTCAGCAACCCGGTGTCTGAAAAAGGGAACCATCTCCAAGG
AGTGGCTGGACGTTACCTGTTCAAGTGTTTGATAAACATTAAGAAAGAGGTAGATGATGC
CTTAGTTGAAATGCATTGGGTTGAGGGCCAGAACAGGGATTTGATGAACCAGCTTTGTAC
CTATATACGTAACCAAATTTTCAGGCTAGTTGGTAGTTAACTCTAAACTTCTTAAACAGT
TTGGAAAGTTCTATAAAAGCTGCTTGCTTTGGAGTGTGGCCTTGGGTGGGGGGGGGGGAC
AAGAGGAATTCCACCATTGGCCCACTGGAAGTGTTATGTGGAATTATCTTTAAAAACAGG
AACAAATTAGAATTTtcttgtggtgcagtgcgttaaggatccggcgttgtcactgcagca
gcttgagttgcttctgtggtgtgggtttgatccctggcctgggaacttccatatgccttg
ggcaCTGCCCTCCCCCCAATAATAATAATTAAAAACAAAGAAACAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGGGAGAAGTGGAGGTTTTGGAGAGTTGTAAAGTCTCCAGCAATGGAGCCCCGGA
CCAAGAGGCTTCTGAGCAGTTCAGCAACCCGGTGTCTGAAAAAGGGAACCATCTCCAAGG
AGTGGCTGGACGTTACCTGTTCAAGTGTTTGATAAACATTAAGAAAGAGGTAGATGATGC
CTTAGTTGAAATGCATTGGGTTGAGGGCCAGAACAGGGATTTGATGAACCAGCTTTGTAC
CTATATACGTAACCAAATTTTCAGGCTAGTTGGTAGTTAACTCTAAACTTCTTAAACAGT
TTGGAAAGTTCTATAAAAGCTGCTTGCTTTGGAGTGTGGCCTTGGGTGGGGGGGGGGGAC
AAGAGGAATTCCACCATTGGCCCACTGGAAGTGTTATGTGGAATTATCTTTAAAAACAGG
AACAAATTAGAATTTtcttgtggtgcagtgcgttaaggatccggcgttgtcactgcagca
gcttgagttgcttctgtggtgtgggtttgatccctggcctgggaacttccatatgccttg
ggcaCTGCCCTCCCCCCAATAATAATAATTAAAAACAAAGAAACAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.925673

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.925673

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC050603, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC050603, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-436, gnl|bosTau2|chr19 (17952257-17951829)
               

               
               1-436, gnl|Hg17|chr17 (2270296-2269872)
               

               
               1-436, gnl|Mm7|chr11 (74899077-74899585)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr19 (17952257-17951829)
               

               
               1-436, gnl|Hg17|chr17 (2270296-2269872)
               

               
               1-436, gnl|Mm7|chr11 (74899077-74899585)

	1-436, gnl\|bosTau2\|chr19 (17952257-17951829)
	1-436, gnl\|Hg17\|chr17 (2270296-2269872)
	1-436, gnl\|Mm7\|chr11 (74899077-74899585)