Non-Coding RNA Search

Emb1-C0005196_E11

Sequence:


               
               GCAAATTCAGAAGAAACAAAAGATTTTGGAGGAACTACAGAAAGTAGAACGAGAGTTACA
ACTGAAAACTCAGCAGCAGCTAAAAAAGCAGTATCTAGAGGTTAAAGCTCAAAGGATCCA
ACTTCAGCAGCAGCAGCAACAGTCTTGCCAGCATCTGGGACTGCTAACTCCTGTTGGGGT
TGGAGAGCAGCTTTCCGAGGGAGACTATGCACGGTTACAGCAAGTGGATCCCGTTTTGCT
TAAAGATGAACCCCAGCAGACTGCTGCTCAGATGGGTTTTGCACCAATCCAGCCCCTGGC
CATGCCTCAAGCTTTGCCTCTGGCGGCAGGTCCCTTGCCTCCAGGGTCCATCGCAAATCT
TACAGAACTGCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGG
GCTGGGGCAAGGAATTCTGACAGAAACACAACAAGGGTCAATGGTAGCCAGCCCTGCTCA
GACCCTCAATGACACGCTGGATGACATCATGGCAGTCAGTGGAAGAGCATCTGCAATGTC
AAACACTCCTACCCACAGTATCGCTGCTTCCATTTCCCAACCTCAGACTCCAACTCCAAG
TCCTATCATCTCTCCTTCAGCCATGCTTCCTATCTACCCTGCCATTGATATTGATGCACA
GACTGAGAGTAATCATGACACGGCACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATTCAGAAGAAACAAAAGATTTTGGAGGAACTACAGAAAGTAGAACGAGAGTTACA
ACTGAAAACTCAGCAGCAGCTAAAAAAGCAGTATCTAGAGGTTAAAGCTCAAAGGATCCA
ACTTCAGCAGCAGCAGCAACAGTCTTGCCAGCATCTGGGACTGCTAACTCCTGTTGGGGT
TGGAGAGCAGCTTTCCGAGGGAGACTATGCACGGTTACAGCAAGTGGATCCCGTTTTGCT
TAAAGATGAACCCCAGCAGACTGCTGCTCAGATGGGTTTTGCACCAATCCAGCCCCTGGC
CATGCCTCAAGCTTTGCCTCTGGCGGCAGGTCCCTTGCCTCCAGGGTCCATCGCAAATCT
TACAGAACTGCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGG
GCTGGGGCAAGGAATTCTGACAGAAACACAACAAGGGTCAATGGTAGCCAGCCCTGCTCA
GACCCTCAATGACACGCTGGATGACATCATGGCAGTCAGTGGAAGAGCATCTGCAATGTC
AAACACTCCTACCCACAGTATCGCTGCTTCCATTTCCCAACCTCAGACTCCAACTCCAAG
TCCTATCATCTCTCCTTCAGCCATGCTTCCTATCTACCCTGCCATTGATATTGATGCACA
GACTGAGAGTAATCATGACACGGCACTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-121, - strand, RNAz p=0.901362
               

               
               242-441, - strand, RNAz p=0.93469

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, - strand, RNAz p=0.901362
               

               
               242-441, - strand, RNAz p=0.93469

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               93-197, + strand, RNAmicro p=0.930324

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               93-197, + strand, RNAmicro p=0.930324

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-515, gnl|bosTau2|chr18 (27123545-27123032)
               

               
               2-515, gnl|Hg17|chr4 (74370796-74370283)
               

               
               2-515, gnl|Mm7|chr5 (90254478-90253965)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-515, gnl|bosTau2|chr18 (27123545-27123032)
               

               
               2-515, gnl|Hg17|chr4 (74370796-74370283)
               

               
               2-515, gnl|Mm7|chr5 (90254478-90253965)

	2-121, - strand, RNAz p=0.901362
	242-441, - strand, RNAz p=0.93469

	2-515, gnl\|bosTau2\|chr18 (27123545-27123032)
	2-515, gnl\|Hg17\|chr4 (74370796-74370283)
	2-515, gnl\|Mm7\|chr5 (90254478-90253965)