Non-Coding RNA Search

Emb1-C0005196_O13

Sequence:


               
               GGTGCAGACCAATGAGCTAAAGGCAGAGAAGGCCTCTCAGAAAGCCACCAAGAAGACCAA
GACTGTTCAGTGTAAAGTGACCCTCCTGGATGGCACCGAGTATAGCTGTGACCTGGAGGC
GTCCTTGGATTGTGCGGTGCCAGTGAGCAAGGTGGTGGCAGCAGTCGGAGATCTGGGCTG
CAGACGGGAAGTGGACAGTCTAGACAGAAGAGAGTCAGCATTAATGAGGACACGGAAACA
CGAAGACTTATTCCGAACTGAGGAGGCTGAATAAGCTGTGACCATGACTACTGAAGTTGG
CTCCGCGTCCGAGGTGAAGAAGGAATCTGACCAGTTAGGAGCAGATGCAACCAAGGAGAA
ACCGAAAGAAGTAGCAGAAAATCAGCAGAACCAGTCCTCTGATCCAGAGGAGGAAAAGGG
TTCCCAGTCGTCTCCTCCAGCTGAAAGCCAAAGTAGTTCACGCCCCCAGAAGAAAGAGAG
AGATCCATCTGGGAGCAGGGGCATTTCTCGGTTCATACCCCCGTGGCTTAAGAAACAGAA
GTCCTACACCTTAGTCGTGGCCAAAGATGGAGGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCAGACCAATGAGCTAAAGGCAGAGAAGGCCTCTCAGAAAGCCACCAAGAAGACCAA
GACTGTTCAGTGTAAAGTGACCCTCCTGGATGGCACCGAGTATAGCTGTGACCTGGAGGC
GTCCTTGGATTGTGCGGTGCCAGTGAGCAAGGTGGTGGCAGCAGTCGGAGATCTGGGCTG
CAGACGGGAAGTGGACAGTCTAGACAGAAGAGAGTCAGCATTAATGAGGACACGGAAACA
CGAAGACTTATTCCGAACTGAGGAGGCTGAATAAGCTGTGACCATGACTACTGAAGTTGG
CTCCGCGTCCGAGGTGAAGAAGGAATCTGACCAGTTAGGAGCAGATGCAACCAAGGAGAA
ACCGAAAGAAGTAGCAGAAAATCAGCAGAACCAGTCCTCTGATCCAGAGGAGGAAAAGGG
TTCCCAGTCGTCTCCTCCAGCTGAAAGCCAAAGTAGTTCACGCCCCCAGAAGAAAGAGAG
AGATCCATCTGGGAGCAGGGGCATTTCTCGGTTCATACCCCCGTGGCTTAAGAAACAGAA
GTCCTACACCTTAGTCGTGGCCAAAGATGGAGGAGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61867950|ref|XP_600172.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867950|ref|XP_600172.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-387, + strand, RNAz p=0.709985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-387, + strand, RNAz p=0.709985

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               269-577, gnl|bosTau2|chr9 (39427217-39426909)
               

               
               269-577, gnl|Hg17|chr6 (131319333-131319025)
               

               
               269-577, gnl|Mm7|chr10 (25193758-25194063)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-577, gnl|bosTau2|chr9 (39427217-39426909)
               

               
               269-577, gnl|Hg17|chr6 (131319333-131319025)
               

               
               269-577, gnl|Mm7|chr10 (25193758-25194063)

	269-577, gnl\|bosTau2\|chr9 (39427217-39426909)
	269-577, gnl\|Hg17\|chr6 (131319333-131319025)
	269-577, gnl\|Mm7\|chr10 (25193758-25194063)