Non-Coding RNA Search

Emb1-C0005211_N14

Sequence:


               
               TGCGCCGCtttttttttttttttttttttttttttttttttttttttttttttttttttt
tttttttttttaaaatttttgtttcttttttCAATTAAATTAAATCAAACCTGCCCGGTA
TTTTATTAAACTTTCCCTATTTACCCCTGATTTAGGGAATGGAAGGGAATTTTCGATATG
CTCATCCCCCAACTTTTAAAAAAAAATGAACGGGGTCAATGATGCCCAACAAGGGCTCCT
TTCACACGGGGGGACTGCTTTTCCAAAGGGGTTAAAGGGACCCCTCCAACCCCTGACATG
GATTACCCATAAACTTTGGGGGAAAAGGGGGGAAAATGAAAATCTAACACAAATTAACCG
TCCCCTAAGGGTAAATCATATACTCCACAGTTACTTTTTTTAAAAAGTTCTTCTGGCAAA
ATTAAAGAAAAAAAACTTCTCTTGTTTGAAGGGAACCCCCCCCCTTTTTTTTTGTGTAGG
GAAGGGGAGAAGGGAAATGCTCTTAAAATTGGTATAATTACCCTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCCGCtttttttttttttttttttttttttttttttttttttttttttttttttttt
tttttttttttaaaatttttgtttcttttttCAATTAAATTAAATCAAACCTGCCCGGTA
TTTTATTAAACTTTCCCTATTTACCCCTGATTTAGGGAATGGAAGGGAATTTTCGATATG
CTCATCCCCCAACTTTTAAAAAAAAATGAACGGGGTCAATGATGCCCAACAAGGGCTCCT
TTCACACGGGGGGACTGCTTTTCCAAAGGGGTTAAAGGGACCCCTCCAACCCCTGACATG
GATTACCCATAAACTTTGGGGGAAAAGGGGGGAAAATGAAAATCTAACACAAATTAACCG
TCCCCTAAGGGTAAATCATATACTCCACAGTTACTTTTTTTAAAAAGTTCTTCTGGCAAA
ATTAAAGAAAAAAAACTTCTCTTGTTTGAAGGGAACCCCCCCCCTTTTTTTTTGTGTAGG
GAAGGGGAGAAGGGAAATGCTCTTAAAATTGGTATAATTACCCTTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               231-343, + strand, RNAz p=0.578022

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-343, + strand, RNAz p=0.578022

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-536, gnl|bosTau2|chr11 (15791576-15791110)
               

               
               72-536, gnl|Hg17|chr2 (39123524-39123994)
               

               
               72-536, gnl|Mm7|chr17 (78692849-78693315)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-536, gnl|bosTau2|chr11 (15791576-15791110)
               

               
               72-536, gnl|Hg17|chr2 (39123524-39123994)
               

               
               72-536, gnl|Mm7|chr17 (78692849-78693315)

	72-536, gnl\|bosTau2\|chr11 (15791576-15791110)
	72-536, gnl\|Hg17\|chr2 (39123524-39123994)
	72-536, gnl\|Mm7\|chr17 (78692849-78693315)