Non-Coding RNA Search

Emb1-C0005213_P20

Sequence:


               
               GGAACAGCGATGCAATGCAAACACCATATGCCCAGGAAATATCAGAGAATCTGCTGGTTA
TCTCACAAATCTTTACCTATCTGGTTATGTGCTCCAGCAGAGGACACCTACCAAAAGTTT
CGTTAAGGCAGAAAAGAGCAAACTCCCCCCGGTTTTTACAAATAATTCTACTTCTCTTTT
AATGCCACTCGGGAAGTGGCCTCTTTGAAGGTTCCGCAGCTCATAAAGCTGGAACTTCTT
CCCTTCCCCACCTTCCTTACTTAACTTGCCGTCACAGAAGCTAACTAGCAGCCGTAGTTA
ATGCATCGATTTAGCTGGAGACCCAGAAGGAGCAAGTGCTGGAGTCAGCGGAACTCTTAA
ACAGTCCTCGGAGACCAGAGTCATTTGCACATTGGAAAACAGCTAATGGGCCAGGGAAGC
AGAGGTTAGTTGCAGGGTCTTTGCTGTGTCTCCTTTCCGTCACAGTGGGAGAGATCACTG
CTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACAGCGATGCAATGCAAACACCATATGCCCAGGAAATATCAGAGAATCTGCTGGTTA
TCTCACAAATCTTTACCTATCTGGTTATGTGCTCCAGCAGAGGACACCTACCAAAAGTTT
CGTTAAGGCAGAAAAGAGCAAACTCCCCCCGGTTTTTACAAATAATTCTACTTCTCTTTT
AATGCCACTCGGGAAGTGGCCTCTTTGAAGGTTCCGCAGCTCATAAAGCTGGAACTTCTT
CCCTTCCCCACCTTCCTTACTTAACTTGCCGTCACAGAAGCTAACTAGCAGCCGTAGTTA
ATGCATCGATTTAGCTGGAGACCCAGAAGGAGCAAGTGCTGGAGTCAGCGGAACTCTTAA
ACAGTCCTCGGAGACCAGAGTCATTTGCACATTGGAAAACAGCTAATGGGCCAGGGAAGC
AGAGGTTAGTTGCAGGGTCTTTGCTGTGTCTCCTTTCCGTCACAGTGGGAGAGATCACTG
CTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               312-430, + strand, RNAz p=0.584311

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-430, + strand, RNAz p=0.584311

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-485, gnl|bosTau2|chr16 (8206889-8207378)
               

               
               1-485, gnl|canFam2|chr38 (14961818-14962122)
               

               
               1-485, gnl|dasNov1|scaffold_242 (96182-96490)
               

               
               1-485, gnl|echTel1|scaffold_242353 (5273-4966)
               

               
               1-485, gnl|hg17|chr1 (213198179-213198486)
               

               
               1-485, gnl|Hg17|chr1 (213198667-213198182)
               

               
               1-485, gnl|loxAfr1|scaffold_31789 (23857-23550)
               

               
               1-485, gnl|mm7|chr1 (187606103-187605801)
               

               
               1-485, gnl|Mm7|chr1 (187605673-187606100)
               

               
               1-485, gnl|monDom2|scaffold_13 (21834175-21834485)
               

               
               1-485, gnl|oryCun1|scaffold_199108 (130849-131156)
               

               
               1-485, gnl|panTro1|chr1 (196921497-196921804)
               

               
               1-485, gnl|rheMac2|chr1 (153788761-153788454)
               

               
               1-485, gnl|rn3|chr13 (104409418-104409115)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-485, gnl|bosTau2|chr16 (8206889-8207378)
               

               
               1-485, gnl|canFam2|chr38 (14961818-14962122)
               

               
               1-485, gnl|dasNov1|scaffold_242 (96182-96490)
               

               
               1-485, gnl|echTel1|scaffold_242353 (5273-4966)
               

               
               1-485, gnl|hg17|chr1 (213198179-213198486)
               

               
               1-485, gnl|Hg17|chr1 (213198667-213198182)
               

               
               1-485, gnl|loxAfr1|scaffold_31789 (23857-23550)
               

               
               1-485, gnl|mm7|chr1 (187606103-187605801)
               

               
               1-485, gnl|Mm7|chr1 (187605673-187606100)
               

               
               1-485, gnl|monDom2|scaffold_13 (21834175-21834485)
               

               
               1-485, gnl|oryCun1|scaffold_199108 (130849-131156)
               

               
               1-485, gnl|panTro1|chr1 (196921497-196921804)
               

               
               1-485, gnl|rheMac2|chr1 (153788761-153788454)
               

               
               1-485, gnl|rn3|chr13 (104409418-104409115)

	1-485, gnl\|bosTau2\|chr16 (8206889-8207378)
	1-485, gnl\|canFam2\|chr38 (14961818-14962122)
	1-485, gnl\|dasNov1\|scaffold_242 (96182-96490)
	1-485, gnl\|echTel1\|scaffold_242353 (5273-4966)
	1-485, gnl\|hg17\|chr1 (213198179-213198486)
	1-485, gnl\|Hg17\|chr1 (213198667-213198182)
	1-485, gnl\|loxAfr1\|scaffold_31789 (23857-23550)
	1-485, gnl\|mm7\|chr1 (187606103-187605801)
	1-485, gnl\|Mm7\|chr1 (187605673-187606100)
	1-485, gnl\|monDom2\|scaffold_13 (21834175-21834485)
	1-485, gnl\|oryCun1\|scaffold_199108 (130849-131156)
	1-485, gnl\|panTro1\|chr1 (196921497-196921804)
	1-485, gnl\|rheMac2\|chr1 (153788761-153788454)
	1-485, gnl\|rn3\|chr13 (104409418-104409115)