Non-Coding RNA Search

Emb1-C0005215_A06

Sequence:


               
               CCCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTAACCTCTATTCAGAGCCAAGGCCAGAG
AGACCGTTCTCCATGCCTACTTTCACAGGGTACTTTTGGCTTTATGCTTGCTTGTCCTTT
CCCAAAGGTAGTCTCTGATCTGGCGTTTCAACCTGTGGAAGCCACATCTTGGTCCCTAGC
CTCTCTGTGTTCTAAAGCTATAGGTCCCCTAGGTCTGTATATGCCACCTAGGTCTCTATT
ATTTTTTTCAAATTCTATAGTTTTAAAAGCCATCTTACTTTCCTGATACCTACCTGTTCC
TTTTTGCAAACTCACCCATTCATTTAAAATGACTTTCTGTTGTCATGCTTTTTAAAAAAA
AAAAAAAAAAAGTCAAGCATGTTTTCAATGTTTTATCACTTAAAGATTCGGGCAGTCATT
TTGTCAGAAAAAGAAATCCAATGAATGCTTTCCTGACTGCTCGACCTGAAACCCAGTGAG
TGTTTTCTTGACCGCTCAACCTAATACCACGGCCATATTGAGTTTTAAAACATTTTCTAA
AAAGAACTATGTAGAAATTATCTCAGGGCTCTCGAGTCCAATAGGAACTTTTCTTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTAACCTCTATTCAGAGCCAAGGCCAGAG
AGACCGTTCTCCATGCCTACTTTCACAGGGTACTTTTGGCTTTATGCTTGCTTGTCCTTT
CCCAAAGGTAGTCTCTGATCTGGCGTTTCAACCTGTGGAAGCCACATCTTGGTCCCTAGC
CTCTCTGTGTTCTAAAGCTATAGGTCCCCTAGGTCTGTATATGCCACCTAGGTCTCTATT
ATTTTTTTCAAATTCTATAGTTTTAAAAGCCATCTTACTTTCCTGATACCTACCTGTTCC
TTTTTGCAAACTCACCCATTCATTTAAAATGACTTTCTGTTGTCATGCTTTTTAAAAAAA
AAAAAAAAAAAGTCAAGCATGTTTTCAATGTTTTATCACTTAAAGATTCGGGCAGTCATT
TTGTCAGAAAAAGAAATCCAATGAATGCTTTCCTGACTGCTCGACCTGAAACCCAGTGAG
TGTTTTCTTGACCGCTCAACCTAATACCACGGCCATATTGAGTTTTAAAACATTTTCTAA
AAAGAACTATGTAGAAATTATCTCAGGGCTCTCGAGTCCAATAGGAACTTTTCTTATTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-461, - strand, RNAz p=0.53531

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-461, - strand, RNAz p=0.53531

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               303-560, gnl|bosTau2|chr3 (24818915-24819160)
               

               
               303-560, gnl|Hg17|chr1 (113685665-113685464)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               303-560, gnl|bosTau2|chr3 (24818915-24819160)
               

               
               303-560, gnl|Hg17|chr1 (113685665-113685464)

	303-560, gnl\|bosTau2\|chr3 (24818915-24819160)
	303-560, gnl\|Hg17\|chr1 (113685665-113685464)