Non-Coding RNA Search

Emb1-C0005216_J01

Sequence:


               
               TGCAGGGTAAGTGTTAACAGAAGTGGTACAGAATTTCTGAAGATTGGGCTTTGTTTATAC
AGTCCACTCTGCCTGATGGACAGCTTGTTATAGCTTTTAAAGAACTGGGCAAGCCCTCTG
ATCTGACCCCTTCTTGACCTCTGCAGCCCAAAGGTCAGTCTGCAGCTAATAAACTCGGAG
GTTCTTAGGGTCTACTGTAGGAAAAGGCAGAAAAAGGGCAGCTGCAGGGGCCGGGTGTCC
CAGGATAGGCTGCTTTAGGGTCACTCTCTGATAATGAAAATGATTACCAAATTATATGGA
AGTTTAACCGCAGTCGTGAGTGAGAGGAGGGTGGAGCCCAGCGTATTAGGTTTGATAAAT
GAACCGTGAAGAGGCCCATCTGGCCCTCAACATCTTTTCTCCCCCTCTTTCCCTACCAAG
GGGAAACATTTTAAAATAACAGCAGTACATATAGACTCAATGACCCATGCAAGGAGCTGG
AATGGATTAAGATTTAATGGTGACAGTGGAAGAAATTATCATTTGAAAAGTGCACTGAAG
AAAAGGTACAGTTCAATGTCCAGGCCCCAGTTGTTGCTCTAAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGGTAAGTGTTAACAGAAGTGGTACAGAATTTCTGAAGATTGGGCTTTGTTTATAC
AGTCCACTCTGCCTGATGGACAGCTTGTTATAGCTTTTAAAGAACTGGGCAAGCCCTCTG
ATCTGACCCCTTCTTGACCTCTGCAGCCCAAAGGTCAGTCTGCAGCTAATAAACTCGGAG
GTTCTTAGGGTCTACTGTAGGAAAAGGCAGAAAAAGGGCAGCTGCAGGGGCCGGGTGTCC
CAGGATAGGCTGCTTTAGGGTCACTCTCTGATAATGAAAATGATTACCAAATTATATGGA
AGTTTAACCGCAGTCGTGAGTGAGAGGAGGGTGGAGCCCAGCGTATTAGGTTTGATAAAT
GAACCGTGAAGAGGCCCATCTGGCCCTCAACATCTTTTCTCCCCCTCTTTCCCTACCAAG
GGGAAACATTTTAAAATAACAGCAGTACATATAGACTCAATGACCCATGCAAGGAGCTGG
AATGGATTAAGATTTAATGGTGACAGTGGAAGAAATTATCATTTGAAAAGTGCACTGAAG
AAAAGGTACAGTTCAATGTCCAGGCCCCAGTTGTTGCTCTAAGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-439, + strand, RNAz p=0.763471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-439, + strand, RNAz p=0.763471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-582, gnl|bosTau2|chr18 (19843059-19842478)
               

               
               1-582, gnl|Hg17|chr16 (52528702-52529283)
               

               
               1-582, gnl|Mm7|chr8 (90117997-90118578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-582, gnl|bosTau2|chr18 (19843059-19842478)
               

               
               1-582, gnl|Hg17|chr16 (52528702-52529283)
               

               
               1-582, gnl|Mm7|chr8 (90117997-90118578)

	1-582, gnl\|bosTau2\|chr18 (19843059-19842478)
	1-582, gnl\|Hg17\|chr16 (52528702-52529283)
	1-582, gnl\|Mm7\|chr8 (90117997-90118578)