Non-Coding RNA Search

Emb1-C0005217_I24

Sequence:


               
               CACTTTGTGTTCAAATGAATGATATTTTGCACTTATATAGCACCTTATGTAGTCAAAGTG
CTTTACAATCATGATTACTTGACAGCCATTCATCAATGTAAATAAACATAGTCTATAATC
TGTCAACAAATCTAAGCACTTTGGGGCAACCAAATACCCAAGAGAATCTACTCAGTAGCA
AATTCTCAGACTAGTACACAGAAGAAAGATTTAAGAGACTTGTTGCTACATCACATATAA
GAAGTCACTTATTGATCTTAATGACTGATATTAAGATGGTTAAGTATTAGGAATTATTGA
GAAATAGAAGAGTTTATGTTAAAGAATAAGTAAAACAAATGAGGTACAAGTCAACAAGGA
AACTACCCCAAAGGTAAGGCTACCAATGACTTGTATTAGGTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTGTGTTCAAATGAATGATATTTTGCACTTATATAGCACCTTATGTAGTCAAAGTG
CTTTACAATCATGATTACTTGACAGCCATTCATCAATGTAAATAAACATAGTCTATAATC
TGTCAACAAATCTAAGCACTTTGGGGCAACCAAATACCCAAGAGAATCTACTCAGTAGCA
AATTCTCAGACTAGTACACAGAAGAAAGATTTAAGAGACTTGTTGCTACATCACATATAA
GAAGTCACTTATTGATCTTAATGACTGATATTAAGATGGTTAAGTATTAGGAATTATTGA
GAAATAGAAGAGTTTATGTTAAAGAATAAGTAAAACAAATGAGGTACAAGTCAACAAGGA
AACTACCCCAAAGGTAAGGCTACCAATGACTTGTATTAGGTGTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-158, - strand, RNAz p=0.632009

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, - strand, RNAz p=0.632009

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032410, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032410, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-395, gnl|bosTau2|chr27 (24137811-24137420)
               

               
               1-395, gnl|canFam2|chr16 (25748384-25747732)
               

               
               1-395, gnl|dasNov1|scaffold_48207 (10461-9800)
               

               
               1-395, gnl|echTel1|scaffold_190017 (9829-9159)
               

               
               1-395, gnl|hg17|chr8 (42993321-42993971)
               

               
               1-395, gnl|Hg17|chr8 (42994064-42993676)
               

               
               1-395, gnl|loxAfr1|scaffold_11659 (46783-47448)
               

               
               1-395, gnl|mm7|chr8 (24787872-24787315)
               

               
               1-395, gnl|Mm7|chr8 (24787222-24787579)
               

               
               1-395, gnl|monDom2|scaffold_1 (78945918-78945208)
               

               
               1-395, gnl|panTro1|chr7 (44477649-44478299)
               

               
               1-395, gnl|rheMac2|chr8 (43626673-43627326)
               

               
               1-395, gnl|rn3|chr16 (70424342-70424911)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr27 (24137811-24137420)
               

               
               1-395, gnl|canFam2|chr16 (25748384-25747732)
               

               
               1-395, gnl|dasNov1|scaffold_48207 (10461-9800)
               

               
               1-395, gnl|echTel1|scaffold_190017 (9829-9159)
               

               
               1-395, gnl|hg17|chr8 (42993321-42993971)
               

               
               1-395, gnl|Hg17|chr8 (42994064-42993676)
               

               
               1-395, gnl|loxAfr1|scaffold_11659 (46783-47448)
               

               
               1-395, gnl|mm7|chr8 (24787872-24787315)
               

               
               1-395, gnl|Mm7|chr8 (24787222-24787579)
               

               
               1-395, gnl|monDom2|scaffold_1 (78945918-78945208)
               

               
               1-395, gnl|panTro1|chr7 (44477649-44478299)
               

               
               1-395, gnl|rheMac2|chr8 (43626673-43627326)
               

               
               1-395, gnl|rn3|chr16 (70424342-70424911)

	1-395, gnl\|bosTau2\|chr27 (24137811-24137420)
	1-395, gnl\|canFam2\|chr16 (25748384-25747732)
	1-395, gnl\|dasNov1\|scaffold_48207 (10461-9800)
	1-395, gnl\|echTel1\|scaffold_190017 (9829-9159)
	1-395, gnl\|hg17\|chr8 (42993321-42993971)
	1-395, gnl\|Hg17\|chr8 (42994064-42993676)
	1-395, gnl\|loxAfr1\|scaffold_11659 (46783-47448)
	1-395, gnl\|mm7\|chr8 (24787872-24787315)
	1-395, gnl\|Mm7\|chr8 (24787222-24787579)
	1-395, gnl\|monDom2\|scaffold_1 (78945918-78945208)
	1-395, gnl\|panTro1\|chr7 (44477649-44478299)
	1-395, gnl\|rheMac2\|chr8 (43626673-43627326)
	1-395, gnl\|rn3\|chr16 (70424342-70424911)