Non-Coding RNA Search

Emb1-C0005218_H08

Sequence:


               
               CCCCTTTAAAATAAATTTTCCTTTCCTTTTTTTTTGTTTTTGTTTTTTGTCTTTTTTTTT
Aagggctgcacgcacagcatatgagaattcccaggctagggattgaattggagctggtgc
ttctggcctacaccacagctcataacaaccccagatccttaacccaatgagtgaggccag
ggaacaaacctgcgtcctcatggattgtagttgggtttgttactgctgagccacaatggg
aactccCCTCCTACTTTCAAAAGACCGAAAGGCAGTCCTTTTTTATTTTTATTTTTCATT
TTTGCTTAATGCAAGCGACAGGTACGCCAATGACTTGTCAGTTCATGTGACTCAGAAGCG
CACCCTAGTTTGGCTTTTTGCTGCCTCCCTAATCACCCTCTATCTGTTAACCTATAATGG
CTTGTCTGCTTGCAGCAACCTTCATTAAGGCAAGGTCACAACTTTCAGCATCAGAGCCAA
CACTTCTTACTAAACTGGCCACCAAGGGCTGCTGTCAGAATGGTGCGGCTGAGCTCACCT
CCCTACAGGCAAGTTTACTTTTTCTACAACCAGTAAATTTTGTTAAGCTACCAATCCTGG
TTTCAAGACTTTGGGTCTCACTACACGGCCTCCAGTCACCAAGCATGCTTTACGCTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTTAAAATAAATTTTCCTTTCCTTTTTTTTTGTTTTTGTTTTTTGTCTTTTTTTTT
Aagggctgcacgcacagcatatgagaattcccaggctagggattgaattggagctggtgc
ttctggcctacaccacagctcataacaaccccagatccttaacccaatgagtgaggccag
ggaacaaacctgcgtcctcatggattgtagttgggtttgttactgctgagccacaatggg
aactccCCTCCTACTTTCAAAAGACCGAAAGGCAGTCCTTTTTTATTTTTATTTTTCATT
TTTGCTTAATGCAAGCGACAGGTACGCCAATGACTTGTCAGTTCATGTGACTCAGAAGCG
CACCCTAGTTTGGCTTTTTGCTGCCTCCCTAATCACCCTCTATCTGTTAACCTATAATGG
CTTGTCTGCTTGCAGCAACCTTCATTAAGGCAAGGTCACAACTTTCAGCATCAGAGCCAA
CACTTCTTACTAAACTGGCCACCAAGGGCTGCTGTCAGAATGGTGCGGCTGAGCTCACCT
CCCTACAGGCAAGTTTACTTTTTCTACAACCAGTAAATTTTGTTAAGCTACCAATCCTGG
TTTCAAGACTTTGGGTCTCACTACACGGCCTCCAGTCACCAAGCATGCTTTACGCTCTAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               521-636, - strand, RNAz p=0.764516
               

               
               524-659, - strand, RNAz p=0.70599

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-636, - strand, RNAz p=0.764516
               

               
               524-659, - strand, RNAz p=0.70599

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               293-659, gnl|bosTau2|chr1 (102569867-102569497)
               

               
               293-659, gnl|canFam2|chr31 (34215214-34215707)
               

               
               293-659, gnl|dasNov1|scaffold_25082 (17977-17476)
               

               
               293-659, gnl|hg17|chr21 (37211610-37212104)
               

               
               293-659, gnl|Hg17|chr21 (37212134-37211769)
               

               
               293-659, gnl|loxAfr1|scaffold_70109 (8987-9491)
               

               
               293-659, gnl|mm7|chr16 (94537891-94538348)
               

               
               293-659, gnl|Mm7|chr16 (94538339-94538030)
               

               
               293-659, gnl|oryCun1|scaffold_202656 (75153-75646)
               

               
               293-659, gnl|panTro1|chr22 (37242831-37243325)
               

               
               293-659, gnl|rheMac2|chr3 (9686513-9686019)
               

               
               293-659, gnl|rn3|chr11 (34562191-34562654)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               293-659, gnl|bosTau2|chr1 (102569867-102569497)
               

               
               293-659, gnl|canFam2|chr31 (34215214-34215707)
               

               
               293-659, gnl|dasNov1|scaffold_25082 (17977-17476)
               

               
               293-659, gnl|hg17|chr21 (37211610-37212104)
               

               
               293-659, gnl|Hg17|chr21 (37212134-37211769)
               

               
               293-659, gnl|loxAfr1|scaffold_70109 (8987-9491)
               

               
               293-659, gnl|mm7|chr16 (94537891-94538348)
               

               
               293-659, gnl|Mm7|chr16 (94538339-94538030)
               

               
               293-659, gnl|oryCun1|scaffold_202656 (75153-75646)
               

               
               293-659, gnl|panTro1|chr22 (37242831-37243325)
               

               
               293-659, gnl|rheMac2|chr3 (9686513-9686019)
               

               
               293-659, gnl|rn3|chr11 (34562191-34562654)

	521-636, - strand, RNAz p=0.764516
	524-659, - strand, RNAz p=0.70599

	293-659, gnl\|bosTau2\|chr1 (102569867-102569497)
	293-659, gnl\|canFam2\|chr31 (34215214-34215707)
	293-659, gnl\|dasNov1\|scaffold_25082 (17977-17476)
	293-659, gnl\|hg17\|chr21 (37211610-37212104)
	293-659, gnl\|Hg17\|chr21 (37212134-37211769)
	293-659, gnl\|loxAfr1\|scaffold_70109 (8987-9491)
	293-659, gnl\|mm7\|chr16 (94537891-94538348)
	293-659, gnl\|Mm7\|chr16 (94538339-94538030)
	293-659, gnl\|oryCun1\|scaffold_202656 (75153-75646)
	293-659, gnl\|panTro1\|chr22 (37242831-37243325)
	293-659, gnl\|rheMac2\|chr3 (9686513-9686019)
	293-659, gnl\|rn3\|chr11 (34562191-34562654)