Non-Coding RNA Search

Emb1-C0005218_J11

Sequence:


               
               CTGTTAGGGAAACTCAGAAGAGAGCCCTCCAGTGGTTACACCAGGAAAAGATACCACAAA
GAAGAACTGACTAGATGAGTCTAGTAATAAATGAAATATGGGAGGTGAGGGGCAAGAAGT
ATCAACATGTCTCCCAGGATTTGGATCTGGGAGAAGATGGTGATGCCCACTGTAGGAAAA
TGGAAAGCTGGATCCAAAGGTGTTTCCAGTAGCAGATTTACAATGGTGAACACAGGGAAC
AGACTGAGAGTCCATAATGATAAACAACTAAAGTATATCCATGTTATAGAATATCATGTA
GCCATTAAAAGTAGCATTTTGAGGTTAGGATGATGAGGTTGGTTGTAAACGCGGTTCATT
TCATTGAATTTGCCATTCCATCATAAGATTTACCATTATTTCATGTATCATTAAGAAAGA
AAGAGAAAAGAGTGCTGCCAATTATAATTGAAGAGTGCCATCAATTGTAAGACATCCAGA
TTTCAGACATGTTACAATGTGAAGAAACTTACATCTTAGACTCAATGAAATAAGGCAGAT
TTGTCTTACTTTTGGTCTGATTCATCTGTACCAGAATGGCTTCCCCCCTCCCCCGCCCCG
TAAGGCCAAGAGAGAAGCCAGAGGGCCTGAAAGTTTCTGACCAAGCCTCATCATGTTACC
TAGATTGTTTTTAAACATACATTTATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTAGGGAAACTCAGAAGAGAGCCCTCCAGTGGTTACACCAGGAAAAGATACCACAAA
GAAGAACTGACTAGATGAGTCTAGTAATAAATGAAATATGGGAGGTGAGGGGCAAGAAGT
ATCAACATGTCTCCCAGGATTTGGATCTGGGAGAAGATGGTGATGCCCACTGTAGGAAAA
TGGAAAGCTGGATCCAAAGGTGTTTCCAGTAGCAGATTTACAATGGTGAACACAGGGAAC
AGACTGAGAGTCCATAATGATAAACAACTAAAGTATATCCATGTTATAGAATATCATGTA
GCCATTAAAAGTAGCATTTTGAGGTTAGGATGATGAGGTTGGTTGTAAACGCGGTTCATT
TCATTGAATTTGCCATTCCATCATAAGATTTACCATTATTTCATGTATCATTAAGAAAGA
AAGAGAAAAGAGTGCTGCCAATTATAATTGAAGAGTGCCATCAATTGTAAGACATCCAGA
TTTCAGACATGTTACAATGTGAAGAAACTTACATCTTAGACTCAATGAAATAAGGCAGAT
TTGTCTTACTTTTGGTCTGATTCATCTGTACCAGAATGGCTTCCCCCCTCCCCCGCCCCG
TAAGGCCAAGAGAGAAGCCAGAGGGCCTGAAAGTTTCTGACCAAGCCTCATCATGTTACC
TAGATTGTTTTTAAACATACATTTATGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               51-209, - strand, RNAz p=0.781568
               

               
               550-654, - strand, RNAz p=0.916844

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-209, - strand, RNAz p=0.781568
               

               
               550-654, - strand, RNAz p=0.916844

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-685, gnl|bosTau2|chr11 (76249428-76248780)
               

               
               11-685, gnl|Hg17|chr9 (123397047-123396359)
               

               
               11-685, gnl|Mm7|chr2 (37942318-37941723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-685, gnl|bosTau2|chr11 (76249428-76248780)
               

               
               11-685, gnl|Hg17|chr9 (123397047-123396359)
               

               
               11-685, gnl|Mm7|chr2 (37942318-37941723)

	51-209, - strand, RNAz p=0.781568
	550-654, - strand, RNAz p=0.916844

	11-685, gnl\|bosTau2\|chr11 (76249428-76248780)
	11-685, gnl\|Hg17\|chr9 (123397047-123396359)
	11-685, gnl\|Mm7\|chr2 (37942318-37941723)