Non-Coding RNA Search

Emb1-C0005218_N07

Sequence:


               
               AGTTAGGTTTGGCTTATATCTGCTCTGAATCTTGTTAGGCACGTCTCCTGTTTCTTATAT
CTCAGTTCGTCCTGTAGAAAACCATGACATCTAACTTACTAGATGCCCAAAGAACAGCCA
TACAGTATTTTCAGCTGCAGAGACTGGCAAAGGGTGCATTTTCTATTTAATTCTCATTTT
CCACCTCTGAAGTAAGATTTCTGGCTTGACACCAAACTCCTATCATCCCAGGAAGGAAGT
ACAGTGGATTTGGTGCATCTCTTTTCTCTCCACAACCTCTTTCCAAGGCATTTCCACAGA
AGCGCTGGGCCCCAGTTTTTCTGTGAAAAGCAAAACTCTTCACATAGATTTTTTTACACA
GCTGCTGTGTTTGTCCTAATCCTTTTCCTGAACAGCCTTGTTTCCGTGGCCTTGCTCTAG
GGCTGCTTTCGGCAACCTTTCTAATACAGGTTTAATGTTGATTAGTCCCAAAACGATTCT
AGGGCAGAGCTCCCTGCCAGGGTAAAGAATGAACAAAATTGGTTTGCACACGGGCAAGCT
GCAGTGGCTGCAGCTAGAGTGTCAAATGCAGACCATTTTCTTGTTTACCAAGATGAGATT
AAATTAGCACAGCATGAAGCAAAATAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTAGGTTTGGCTTATATCTGCTCTGAATCTTGTTAGGCACGTCTCCTGTTTCTTATAT
CTCAGTTCGTCCTGTAGAAAACCATGACATCTAACTTACTAGATGCCCAAAGAACAGCCA
TACAGTATTTTCAGCTGCAGAGACTGGCAAAGGGTGCATTTTCTATTTAATTCTCATTTT
CCACCTCTGAAGTAAGATTTCTGGCTTGACACCAAACTCCTATCATCCCAGGAAGGAAGT
ACAGTGGATTTGGTGCATCTCTTTTCTCTCCACAACCTCTTTCCAAGGCATTTCCACAGA
AGCGCTGGGCCCCAGTTTTTCTGTGAAAAGCAAAACTCTTCACATAGATTTTTTTACACA
GCTGCTGTGTTTGTCCTAATCCTTTTCCTGAACAGCCTTGTTTCCGTGGCCTTGCTCTAG
GGCTGCTTTCGGCAACCTTTCTAATACAGGTTTAATGTTGATTAGTCCCAAAACGATTCT
AGGGCAGAGCTCCCTGCCAGGGTAAAGAATGAACAAAATTGGTTTGCACACGGGCAAGCT
GCAGTGGCTGCAGCTAGAGTGTCAAATGCAGACCATTTTCTTGTTTACCAAGATGAGATT
AAATTAGCACAGCATGAAGCAAAATAGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               475-592, + strand, RNAz p=0.949015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-592, + strand, RNAz p=0.949015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-629, gnl|bosTau2|chr5 (48444962-48445604)
               

               
               9-629, gnl|Hg17|chr12 (31563593-31562957)
               

               
               9-629, gnl|Mm7|chr6 (149165785-149165223)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-629, gnl|bosTau2|chr5 (48444962-48445604)
               

               
               9-629, gnl|Hg17|chr12 (31563593-31562957)
               

               
               9-629, gnl|Mm7|chr6 (149165785-149165223)

	9-629, gnl\|bosTau2\|chr5 (48444962-48445604)
	9-629, gnl\|Hg17\|chr12 (31563593-31562957)
	9-629, gnl\|Mm7\|chr6 (149165785-149165223)