Non-Coding RNA Search

End1-UMC-pd10en3-007-d01

Sequence:


               
               GGACGGAGGCTTGTGGGGCCTTCTCTTCAGGACAATTCCCGGAGGCAGGCTGCTTTGTAT
GGCACCCTGCCTTAAGAGACCGAGTGCCAGGGTGAGGGCTCTCTCGGAGGCACGTGTCCC
CCTCCTCTCCTGCTGTGTTGGCCATGTCCTTCGAATCAGACTGAGACCCACCGCCAGAGA
GACAGAGGGCCGTGGCCATCAAGTTTTCTCCTAAAACTGCTCGGTGCGCTGCAGAAGTAT
CACCTGCCGATGAACCAGGATTCTGCTCTGAGTGCTCCAATTGGGCATTTCTGTTATTCT
CCTTGGTTATCGTTTGGCTACTTACACTTGACAGAGACGAGTTCTGGTGCTTCTGTGCAG
GGTCTTTGGGGCTAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGGAGGCTTGTGGGGCCTTCTCTTCAGGACAATTCCCGGAGGCAGGCTGCTTTGTAT
GGCACCCTGCCTTAAGAGACCGAGTGCCAGGGTGAGGGCTCTCTCGGAGGCACGTGTCCC
CCTCCTCTCCTGCTGTGTTGGCCATGTCCTTCGAATCAGACTGAGACCCACCGCCAGAGA
GACAGAGGGCCGTGGCCATCAAGTTTTCTCCTAAAACTGCTCGGTGCGCTGCAGAAGTAT
CACCTGCCGATGAACCAGGATTCTGCTCTGAGTGCTCCAATTGGGCATTTCTGTTATTCT
CCTTGGTTATCGTTTGGCTACTTACACTTGACAGAGACGAGTTCTGGTGCTTCTGTGCAG
GGTCTTTGGGGCTAGCGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828527|ref|XP_581130.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828527|ref|XP_581130.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.571773
               

               
               257-374, + strand, RNAz p=0.706935
               

               
               263-373, - strand, RNAz p=0.843732

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.571773
               

               
               257-374, + strand, RNAz p=0.706935
               

               
               263-373, - strand, RNAz p=0.843732

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC064581, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064581, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-374, gnl|bosTau2|chr15 (9242138-9241765)
               

               
               1-374, gnl|canFam2|chr5 (19366709-19366115)
               

               
               1-374, gnl|dasNov1|scaffold_4916 (11176-11755)
               

               
               1-374, gnl|echTel1|scaffold_308434 (4568-4000)
               

               
               1-374, gnl|hg17|chr11 (116614511-116615090)
               

               
               1-374, gnl|Hg17|chr11 (116614897-116614524)
               

               
               1-374, gnl|loxAfr1|scaffold_7234 (100262-99688)
               

               
               1-374, gnl|mm7|chr9 (45858397-45857826)
               

               
               1-374, gnl|Mm7|chr9 (45858009-45858382)
               

               
               1-374, gnl|monDom2|scaffold_2 (122021536-122020920)
               

               
               1-374, gnl|oryCun1|scaffold_214625 (105909-106485)
               

               
               1-374, gnl|panTro1|chr9 (118615448-118616027)
               

               
               1-374, gnl|rheMac2|chr14 (115638515-115639094)
               

               
               1-374, gnl|rn3|chr8 (48881765-48881194)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-374, gnl|bosTau2|chr15 (9242138-9241765)
               

               
               1-374, gnl|canFam2|chr5 (19366709-19366115)
               

               
               1-374, gnl|dasNov1|scaffold_4916 (11176-11755)
               

               
               1-374, gnl|echTel1|scaffold_308434 (4568-4000)
               

               
               1-374, gnl|hg17|chr11 (116614511-116615090)
               

               
               1-374, gnl|Hg17|chr11 (116614897-116614524)
               

               
               1-374, gnl|loxAfr1|scaffold_7234 (100262-99688)
               

               
               1-374, gnl|mm7|chr9 (45858397-45857826)
               

               
               1-374, gnl|Mm7|chr9 (45858009-45858382)
               

               
               1-374, gnl|monDom2|scaffold_2 (122021536-122020920)
               

               
               1-374, gnl|oryCun1|scaffold_214625 (105909-106485)
               

               
               1-374, gnl|panTro1|chr9 (118615448-118616027)
               

               
               1-374, gnl|rheMac2|chr14 (115638515-115639094)
               

               
               1-374, gnl|rn3|chr8 (48881765-48881194)

	1-119, - strand, RNAz p=0.571773
	257-374, + strand, RNAz p=0.706935
	263-373, - strand, RNAz p=0.843732

	1-374, gnl\|bosTau2\|chr15 (9242138-9241765)
	1-374, gnl\|canFam2\|chr5 (19366709-19366115)
	1-374, gnl\|dasNov1\|scaffold_4916 (11176-11755)
	1-374, gnl\|echTel1\|scaffold_308434 (4568-4000)
	1-374, gnl\|hg17\|chr11 (116614511-116615090)
	1-374, gnl\|Hg17\|chr11 (116614897-116614524)
	1-374, gnl\|loxAfr1\|scaffold_7234 (100262-99688)
	1-374, gnl\|mm7\|chr9 (45858397-45857826)
	1-374, gnl\|Mm7\|chr9 (45858009-45858382)
	1-374, gnl\|monDom2\|scaffold_2 (122021536-122020920)
	1-374, gnl\|oryCun1\|scaffold_214625 (105909-106485)
	1-374, gnl\|panTro1\|chr9 (118615448-118616027)
	1-374, gnl\|rheMac2\|chr14 (115638515-115639094)
	1-374, gnl\|rn3\|chr8 (48881765-48881194)