Non-Coding RNA Search

End4-UMC-pd12_14end-006-b02

Sequence:


               
               GGGGAGGGTGGAGACCCCTGAGAGGGTCCAGACCTCCTGGACCCCAGCTAGTCTCTGTCC
CAGCGAGGTAGGCCTTCCGGTGGGCCGAGACTACTCACGCTTTGTTCTCCTGTAGTGAGC
AGAGACTCTGGGACCCCCCCGAAGGGTTGGGGTAAAGCCATATCCCCGCTGGCCTGCCTG
CCCCTAATACAGGCTGGTGGCAGCCCCTCTATGGAGACAGTAAATTAAATAGTATGTATG
AGTTTCTTCATGCAGCCAGGGATGCACGCTGGCTCCATTTATCCCTGCGCTGTGGCAATG
ACCCCGGCAAAAACCCCAGCAAAACTAATCCCCCCATGTCAATCCTGGCCGGCCTCTTCT
ACATACGCCCGCAGTTTAGATTAATAAACTGTCTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGGGTGGAGACCCCTGAGAGGGTCCAGACCTCCTGGACCCCAGCTAGTCTCTGTCC
CAGCGAGGTAGGCCTTCCGGTGGGCCGAGACTACTCACGCTTTGTTCTCCTGTAGTGAGC
AGAGACTCTGGGACCCCCCCGAAGGGTTGGGGTAAAGCCATATCCCCGCTGGCCTGCCTG
CCCCTAATACAGGCTGGTGGCAGCCCCTCTATGGAGACAGTAAATTAAATAGTATGTATG
AGTTTCTTCATGCAGCCAGGGATGCACGCTGGCTCCATTTATCCCTGCGCTGTGGCAATG
ACCCCGGCAAAAACCCCAGCAAAACTAATCCCCCCATGTCAATCCTGGCCGGCCTCTTCT
ACATACGCCCGCAGTTTAGATTAATAAACTGTCTGCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-162, - strand, RNAz p=0.69013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-162, - strand, RNAz p=0.69013

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-399, gnl|bosTau2|chr3 (70554898-70555296)
               

               
               1-399, gnl|Hg17|chr1 (44760865-44760466)
               

               
               1-399, gnl|Mm7|chr4 (116672867-116673383)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-399, gnl|bosTau2|chr3 (70554898-70555296)
               

               
               1-399, gnl|Hg17|chr1 (44760865-44760466)
               

               
               1-399, gnl|Mm7|chr4 (116672867-116673383)

	1-399, gnl\|bosTau2\|chr3 (70554898-70555296)
	1-399, gnl\|Hg17\|chr1 (44760865-44760466)
	1-399, gnl\|Mm7\|chr4 (116672867-116673383)