Non-Coding RNA Search

Fat1-C94680

Sequence:


               
               GGTTCCTCCAAAATGCATAAAAGATGAGTAACTCCTTTGAACTCATTTCAGTGACAGCAC
TTTGGTTGAAGTTATCTCCCACTCACCCTCCAGTGTTCACAGTAATAACCTTTAGCCACA
CTGCTATGAAAGCACAGGGGGATTTAACATACTTAACCACAGAGATTGTTTTTCAGGCTG
AATTGATAACAGCTTTGCAGCTTCAAAGTCCTACCTTAACATCTCTATAAAATTCAGAGT
TACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCCTCCAAAATGCATAAAAGATGAGTAACTCCTTTGAACTCATTTCAGTGACAGCAC
TTTGGTTGAAGTTATCTCCCACTCACCCTCCAGTGTTCACAGTAATAACCTTTAGCCACA
CTGCTATGAAAGCACAGGGGGATTTAACATACTTAACCACAGAGATTGTTTTTCAGGCTG
AATTGATAACAGCTTTGCAGCTTCAAAGTCCTACCTTAACATCTCTATAAAATTCAGAGT
TACCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               70-180, + strand, RNAz p=0.595145

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-180, + strand, RNAz p=0.595145

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               8-245, gnl|bosTau2|chr20 (13189905-13190141)
               

               
               8-245, gnl|canFam2|chr2 (46161156-46161451)
               

               
               8-245, gnl|dasNov1|scaffold_14328 (37025-37342)
               

               
               8-245, gnl|echTel1|scaffold_307190 (41750-41428)
               

               
               8-245, gnl|hg17|chr5 (55390613-55390944)
               

               
               8-245, gnl|Hg17|chr5 (55390886-55390650)
               

               
               8-245, gnl|loxAfr1|scaffold_71533 (5507-5180)
               

               
               8-245, gnl|mm7|chr13 (109580819-109580542)
               

               
               8-245, gnl|Mm7|chr13 (109580580-109580795)
               

               
               8-245, gnl|oryCun1|scaffold_200318 (44916-45229)
               

               
               8-245, gnl|panTro1|chr4 (60807523-60807192)
               

               
               8-245, gnl|rheMac2|chr6 (53708075-53708400)
               

               
               8-245, gnl|rn3|chr2 (43684464-43684167)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-245, gnl|bosTau2|chr20 (13189905-13190141)
               

               
               8-245, gnl|canFam2|chr2 (46161156-46161451)
               

               
               8-245, gnl|dasNov1|scaffold_14328 (37025-37342)
               

               
               8-245, gnl|echTel1|scaffold_307190 (41750-41428)
               

               
               8-245, gnl|hg17|chr5 (55390613-55390944)
               

               
               8-245, gnl|Hg17|chr5 (55390886-55390650)
               

               
               8-245, gnl|loxAfr1|scaffold_71533 (5507-5180)
               

               
               8-245, gnl|mm7|chr13 (109580819-109580542)
               

               
               8-245, gnl|Mm7|chr13 (109580580-109580795)
               

               
               8-245, gnl|oryCun1|scaffold_200318 (44916-45229)
               

               
               8-245, gnl|panTro1|chr4 (60807523-60807192)
               

               
               8-245, gnl|rheMac2|chr6 (53708075-53708400)
               

               
               8-245, gnl|rn3|chr2 (43684464-43684167)

	8-245, gnl\|bosTau2\|chr20 (13189905-13190141)
	8-245, gnl\|canFam2\|chr2 (46161156-46161451)
	8-245, gnl\|dasNov1\|scaffold_14328 (37025-37342)
	8-245, gnl\|echTel1\|scaffold_307190 (41750-41428)
	8-245, gnl\|hg17\|chr5 (55390613-55390944)
	8-245, gnl\|Hg17\|chr5 (55390886-55390650)
	8-245, gnl\|loxAfr1\|scaffold_71533 (5507-5180)
	8-245, gnl\|mm7\|chr13 (109580819-109580542)
	8-245, gnl\|Mm7\|chr13 (109580580-109580795)
	8-245, gnl\|oryCun1\|scaffold_200318 (44916-45229)
	8-245, gnl\|panTro1\|chr4 (60807523-60807192)
	8-245, gnl\|rheMac2\|chr6 (53708075-53708400)
	8-245, gnl\|rn3\|chr2 (43684464-43684167)