Non-Coding RNA Search

Fat1-C94945

Sequence:


               
               GAGAATAGTCTCGGCTTTTTTTTTTTTTTTTTTGGTAAGAAGGAACTTGGATCCCCAACT
ACCCAATTATAAGTTGCTCACACTGGAACTTATTAACAAAGGGGGATTTCGGGATCACCT
TCTCCAGTGAGATTTAAAATTAAAAAGAAAGAAAAACTTCTGGAGGGCAATCATTGGGTG
AGGGGAGGTAGTCTCTCAAATTTCTGGCTTTACCTGTGACTTAAAAAAAAAAGTCTTCTA
ACATTTAAAAAATTGTTTTTATGCATTTAATTTACTCCTGATCAAATTTTTAAGTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATAGTCTCGGCTTTTTTTTTTTTTTTTTTGGTAAGAAGGAACTTGGATCCCCAACT
ACCCAATTATAAGTTGCTCACACTGGAACTTATTAACAAAGGGGGATTTCGGGATCACCT
TCTCCAGTGAGATTTAAAATTAAAAAGAAAGAAAAACTTCTGGAGGGCAATCATTGGGTG
AGGGGAGGTAGTCTCTCAAATTTCTGGCTTTACCTGTGACTTAAAAAAAAAAGTCTTCTA
ACATTTAAAAAATTGTTTTTATGCATTTAATTTACTCCTGATCAAATTTTTAAGTTTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               19-157, - strand, RNAz p=0.991005

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-157, - strand, RNAz p=0.991005

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               19-240, gnl|bosTau2|chr22 (25515223-25515006)
               

               
               19-240, gnl|canFam2|chr20 (24868356-24868208)
               

               
               19-240, gnl|dasNov1|scaffold_9405 (43657-43785)
               

               
               19-240, gnl|echTel1|scaffold_291988 (4312-4167)
               

               
               19-240, gnl|hg17|chr3 (70083981-70084132)
               

               
               19-240, gnl|Hg17|chr3 (70083981-70084195)
               

               
               19-240, gnl|loxAfr1|scaffold_1767 (34569-34446)
               

               
               19-240, gnl|mm7|chr6 (98094749-98094965)
               

               
               19-240, gnl|monDom2|scaffold_5 (17400573-17400710)
               

               
               19-240, gnl|oryCun1|scaffold_214924 (73380-73251)
               

               
               19-240, gnl|panTro1|chr2 (71894346-71894500)
               

               
               19-240, gnl|rheMac2|chr2 (66220756-66220579)
               

               
               19-240, gnl|rn3|chr4 (132971412-132971662)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-240, gnl|bosTau2|chr22 (25515223-25515006)
               

               
               19-240, gnl|canFam2|chr20 (24868356-24868208)
               

               
               19-240, gnl|dasNov1|scaffold_9405 (43657-43785)
               

               
               19-240, gnl|echTel1|scaffold_291988 (4312-4167)
               

               
               19-240, gnl|hg17|chr3 (70083981-70084132)
               

               
               19-240, gnl|Hg17|chr3 (70083981-70084195)
               

               
               19-240, gnl|loxAfr1|scaffold_1767 (34569-34446)
               

               
               19-240, gnl|mm7|chr6 (98094749-98094965)
               

               
               19-240, gnl|monDom2|scaffold_5 (17400573-17400710)
               

               
               19-240, gnl|oryCun1|scaffold_214924 (73380-73251)
               

               
               19-240, gnl|panTro1|chr2 (71894346-71894500)
               

               
               19-240, gnl|rheMac2|chr2 (66220756-66220579)
               

               
               19-240, gnl|rn3|chr4 (132971412-132971662)

	19-240, gnl\|bosTau2\|chr22 (25515223-25515006)
	19-240, gnl\|canFam2\|chr20 (24868356-24868208)
	19-240, gnl\|dasNov1\|scaffold_9405 (43657-43785)
	19-240, gnl\|echTel1\|scaffold_291988 (4312-4167)
	19-240, gnl\|hg17\|chr3 (70083981-70084132)
	19-240, gnl\|Hg17\|chr3 (70083981-70084195)
	19-240, gnl\|loxAfr1\|scaffold_1767 (34569-34446)
	19-240, gnl\|mm7\|chr6 (98094749-98094965)
	19-240, gnl\|monDom2\|scaffold_5 (17400573-17400710)
	19-240, gnl\|oryCun1\|scaffold_214924 (73380-73251)
	19-240, gnl\|panTro1\|chr2 (71894346-71894500)
	19-240, gnl\|rheMac2\|chr2 (66220756-66220579)
	19-240, gnl\|rn3\|chr4 (132971412-132971662)