Non-Coding RNA Search

Fat1-PT16E2

Sequence:


               
               CAAAATTATTTTTTCTTTGCGGTTAATGATACCTCTTCTGAGAGGTTCTAATACCTAAAG
AGTTTCTCCTTAAAAGTAAAAATGACTTTGTACCATGTAACAACCCCAAAGCCATTCTCT
AGGGGTTTTATTTCCTTCTTCTTCTTTTTTGTCCTTTTCTTTTTAAACTTAGTTTTGGAA
TTATTTTAGCCACTTTGGTTCCTTAGGCCAAGTTTTCAATTGGAGGGTCTATAGTTTCTA
CAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATTATTTTTTCTTTGCGGTTAATGATACCTCTTCTGAGAGGTTCTAATACCTAAAG
AGTTTCTCCTTAAAAGTAAAAATGACTTTGTACCATGTAACAACCCCAAAGCCATTCTCT
AGGGGTTTTATTTCCTTCTTCTTCTTTTTTGTCCTTTTCTTTTTAAACTTAGTTTTGGAA
TTATTTTAGCCACTTTGGTTCCTTAGGCCAAGTTTTCAATTGGAGGGTCTATAGTTTCTA
CAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               59-155, - strand, RNAz p=0.545885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-155, - strand, RNAz p=0.545885

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               5-243, gnl|bosTau2|chr19 (50534732-50534500)
               

               
               5-243, gnl|canFam2|chr9 (16546332-16545794)
               

               
               5-243, gnl|dasNov1|scaffold_267073 (3318-3790)
               

               
               5-243, gnl|echTel1|scaffold_246395 (653-164)
               

               
               5-243, gnl|hg17|chr17 (62497114-62497578)
               

               
               5-243, gnl|Hg17|chr17 (62497368-62497131)
               

               
               5-243, gnl|loxAfr1|scaffold_21418 (1799-1325)
               

               
               5-243, gnl|mm7|chr11 (107802772-107802293)
               

               
               5-243, gnl|Mm7|chr11 (107802503-107802755)
               

               
               5-243, gnl|monDom2|scaffold_18 (18569206-18568709)
               

               
               5-243, gnl|oryCun1|scaffold_212649 (469-5)
               

               
               5-243, gnl|panTro1|chr19 (65768714-65769180)
               

               
               5-243, gnl|rheMac2|chr16 (62431480-62431945)
               

               
               5-243, gnl|rn3|chr10 (97112156-97111657)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-243, gnl|bosTau2|chr19 (50534732-50534500)
               

               
               5-243, gnl|canFam2|chr9 (16546332-16545794)
               

               
               5-243, gnl|dasNov1|scaffold_267073 (3318-3790)
               

               
               5-243, gnl|echTel1|scaffold_246395 (653-164)
               

               
               5-243, gnl|hg17|chr17 (62497114-62497578)
               

               
               5-243, gnl|Hg17|chr17 (62497368-62497131)
               

               
               5-243, gnl|loxAfr1|scaffold_21418 (1799-1325)
               

               
               5-243, gnl|mm7|chr11 (107802772-107802293)
               

               
               5-243, gnl|Mm7|chr11 (107802503-107802755)
               

               
               5-243, gnl|monDom2|scaffold_18 (18569206-18568709)
               

               
               5-243, gnl|oryCun1|scaffold_212649 (469-5)
               

               
               5-243, gnl|panTro1|chr19 (65768714-65769180)
               

               
               5-243, gnl|rheMac2|chr16 (62431480-62431945)
               

               
               5-243, gnl|rn3|chr10 (97112156-97111657)

	5-243, gnl\|bosTau2\|chr19 (50534732-50534500)
	5-243, gnl\|canFam2\|chr9 (16546332-16545794)
	5-243, gnl\|dasNov1\|scaffold_267073 (3318-3790)
	5-243, gnl\|echTel1\|scaffold_246395 (653-164)
	5-243, gnl\|hg17\|chr17 (62497114-62497578)
	5-243, gnl\|Hg17\|chr17 (62497368-62497131)
	5-243, gnl\|loxAfr1\|scaffold_21418 (1799-1325)
	5-243, gnl\|mm7\|chr11 (107802772-107802293)
	5-243, gnl\|Mm7\|chr11 (107802503-107802755)
	5-243, gnl\|monDom2\|scaffold_18 (18569206-18568709)
	5-243, gnl\|oryCun1\|scaffold_212649 (469-5)
	5-243, gnl\|panTro1\|chr19 (65768714-65769180)
	5-243, gnl\|rheMac2\|chr16 (62431480-62431945)
	5-243, gnl\|rn3\|chr10 (97112156-97111657)