Non-Coding RNA Search

Fat1-PT23H8

Sequence:


               
               CGGCACGAGAAGAAGAATACCAAAAACCAGGTTCAGTCTTAGAGTGGATGCTTGGAAAAG
GATGAGTGGTTCTCTGGGACTGTTAGAGTGGATCGCATCACCTTCTAAAGTAGTGATGAA
AACAAAGAGTAAGTCAGAGGGACCATAAAGCACCCTAAATTCCTCCTTCAGGCAAATGAC
ACCAAGTCGTCAAGGATAGATAATTGTTTTCTCTCCATTTTATTATTTACTTTTTTTTGA
AGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCACGAGAAGAAGAATACCAAAAACCAGGTTCAGTCTTAGAGTGGATGCTTGGAAAAG
GATGAGTGGTTCTCTGGGACTGTTAGAGTGGATCGCATCACCTTCTAAAGTAGTGATGAA
AACAAAGAGTAAGTCAGAGGGACCATAAAGCACCCTAAATTCCTCCTTCAGGCAAATGAC
ACCAAGTCGTCAAGGATAGATAATTGTTTTCTCTCCATTTTATTATTTACTTTTTTTTGA
AGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-233, + strand, RNAz p=0.601326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-233, + strand, RNAz p=0.601326

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               10-233, gnl|bosTau2|chr4 (51298590-51298366)
               

               
               10-233, gnl|canFam2|chr14 (8947001-8946361)
               

               
               10-233, gnl|dasNov1|scaffold_119955 (6922-7583)
               

               
               10-233, gnl|echTel1|scaffold_324377 (305-902)
               

               
               10-233, gnl|hg17|chr7 (130218140-130218819)
               

               
               10-233, gnl|Hg17|chr7 (130218840-130218610)
               

               
               10-233, gnl|mm7|chr6 (31123585-31124243)
               

               
               10-233, gnl|Mm7|chr6 (31124264-31124039)
               

               
               10-233, gnl|oryCun1|scaffold_203741 (42911-42301)
               

               
               10-233, gnl|panTro1|chr6 (132800830-132801511)
               

               
               10-233, gnl|rheMac2|chr3 (168457073-168457754)
               

               
               10-233, gnl|rn3|chr4 (58525005-58525653)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-233, gnl|bosTau2|chr4 (51298590-51298366)
               

               
               10-233, gnl|canFam2|chr14 (8947001-8946361)
               

               
               10-233, gnl|dasNov1|scaffold_119955 (6922-7583)
               

               
               10-233, gnl|echTel1|scaffold_324377 (305-902)
               

               
               10-233, gnl|hg17|chr7 (130218140-130218819)
               

               
               10-233, gnl|Hg17|chr7 (130218840-130218610)
               

               
               10-233, gnl|mm7|chr6 (31123585-31124243)
               

               
               10-233, gnl|Mm7|chr6 (31124264-31124039)
               

               
               10-233, gnl|oryCun1|scaffold_203741 (42911-42301)
               

               
               10-233, gnl|panTro1|chr6 (132800830-132801511)
               

               
               10-233, gnl|rheMac2|chr3 (168457073-168457754)
               

               
               10-233, gnl|rn3|chr4 (58525005-58525653)

	10-233, gnl\|bosTau2\|chr4 (51298590-51298366)
	10-233, gnl\|canFam2\|chr14 (8947001-8946361)
	10-233, gnl\|dasNov1\|scaffold_119955 (6922-7583)
	10-233, gnl\|echTel1\|scaffold_324377 (305-902)
	10-233, gnl\|hg17\|chr7 (130218140-130218819)
	10-233, gnl\|Hg17\|chr7 (130218840-130218610)
	10-233, gnl\|mm7\|chr6 (31123585-31124243)
	10-233, gnl\|Mm7\|chr6 (31124264-31124039)
	10-233, gnl\|oryCun1\|scaffold_203741 (42911-42301)
	10-233, gnl\|panTro1\|chr6 (132800830-132801511)
	10-233, gnl\|rheMac2\|chr3 (168457073-168457754)
	10-233, gnl\|rn3\|chr4 (58525005-58525653)