Non-Coding RNA Search

Fet1-UMC-pd20fet-010-f09

Sequence:


               
               AGATACAATGTGGCTGATTTCAAACAGAAACGATGCTCAGTACTTCATTACCTGTTTTGT
TGTTGTTCAGTGCTCACTCTGTGAACAAGATGTCATTTCAATAATAGAGGACAGAAGAAG
GAGGATTTCTGAGGGTCTCGACCCACAAGAATGAGATTTCCAAAAGACTTGGAGAGAAAA
CCAAGTCACTTACCAAATCAAGCTGACTCAATCCATCTCTTTCCCAATTTTACATATGGA
ATTGTACAGAGATGCTGGGAAATTTGGACCTTTCATTCAGGAAAGCAATGGTATTAGGAT
TAAAATGTTGCATTCAGGCTGTTTTTTCACACTAGAGTTAACTTTAACTCATTTTCAATT
CTCCCATAATAAAAATAATGGCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATACAATGTGGCTGATTTCAAACAGAAACGATGCTCAGTACTTCATTACCTGTTTTGT
TGTTGTTCAGTGCTCACTCTGTGAACAAGATGTCATTTCAATAATAGAGGACAGAAGAAG
GAGGATTTCTGAGGGTCTCGACCCACAAGAATGAGATTTCCAAAAGACTTGGAGAGAAAA
CCAAGTCACTTACCAAATCAAGCTGACTCAATCCATCTCTTTCCCAATTTTACATATGGA
ATTGTACAGAGATGCTGGGAAATTTGGACCTTTCATTCAGGAAAGCAATGGTATTAGGAT
TAAAATGTTGCATTCAGGCTGTTTTTTCACACTAGAGTTAACTTTAACTCATTTTCAATT
CTCCCATAATAAAAATAATGGCCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-286, - strand, RNAz p=0.697979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-286, - strand, RNAz p=0.697979

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               168-387, gnl|bosTau2|chr11 (57879580-57879364)
               

               
               168-387, gnl|canFam2|chr17 (19741794-19742137)
               

               
               168-387, gnl|hg17|chr2 (22109338-22109674)
               

               
               168-387, gnl|Hg17|chr2 (22109465-22109681)
               

               
               168-387, gnl|mm7|chr12 (6946394-6946067)
               

               
               168-387, gnl|panTro1|chr12 (22976126-22976462)
               

               
               168-387, gnl|rheMac2|chr13 (21895360-21895694)
               

               
               168-387, gnl|rn3|chr6 (30528789-30528458)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-387, gnl|bosTau2|chr11 (57879580-57879364)
               

               
               168-387, gnl|canFam2|chr17 (19741794-19742137)
               

               
               168-387, gnl|hg17|chr2 (22109338-22109674)
               

               
               168-387, gnl|Hg17|chr2 (22109465-22109681)
               

               
               168-387, gnl|mm7|chr12 (6946394-6946067)
               

               
               168-387, gnl|panTro1|chr12 (22976126-22976462)
               

               
               168-387, gnl|rheMac2|chr13 (21895360-21895694)
               

               
               168-387, gnl|rn3|chr6 (30528789-30528458)

	168-387, gnl\|bosTau2\|chr11 (57879580-57879364)
	168-387, gnl\|canFam2\|chr17 (19741794-19742137)
	168-387, gnl\|hg17\|chr2 (22109338-22109674)
	168-387, gnl\|Hg17\|chr2 (22109465-22109681)
	168-387, gnl\|mm7\|chr12 (6946394-6946067)
	168-387, gnl\|panTro1\|chr12 (22976126-22976462)
	168-387, gnl\|rheMac2\|chr13 (21895360-21895694)
	168-387, gnl\|rn3\|chr6 (30528789-30528458)