Fet1-UMC-pd20fet-011-h06
|
CCTGCTGTTTTTCCAGGCCAGTGTGTGTTTATAATTGTGAATGCACTGCCTATATGCACA
TGGCGTAAGAGTTAGTATACTACATGAGACTGCATGTGAAGCCATATGTGTACTTGTGGG
GTAGCCGCAGAGGTGTACTTATGTTGTGGTTGTGTAGATAATCCATCTGTGACGATGTAA
ATAGTGCAAAGGTGAAGGTGGAATTACACgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtg
cgtgcgtatgtgtatatagatgtatataggtgtgtatatatatgtgtgtgtgtATATGTA
CATGTGTATATATATATTAGGTACCAAGCAGACGTTATGCCTTTCTGCTTTGTACTGTAC
TACTGCTGCTAGCTAATAACCAGCAAAATGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTGCTGTTTTTCCAGGCCAGTGTGTGTTTATAATTGTGAATGCACTGCCTATATGCACA
TGGCGTAAGAGTTAGTATACTACATGAGACTGCATGTGAAGCCATATGTGTACTTGTGGG
GTAGCCGCAGAGGTGTACTTATGTTGTGGTTGTGTAGATAATCCATCTGTGACGATGTAA
ATAGTGCAAAGGTGAAGGTGGAATTACACgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtg
cgtgcgtatgtgtatatagatgtatataggtgtgtatatatatgtgtgtgtgtATATGTA
CATGTGTATATATATATTAGGTACCAAGCAGACGTTATGCCTTTCTGCTTTGTACTGTAC
TACTGCTGCTAGCTAATAACCAGCAAAATGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
220-342, + strand, RNAmicro p=0.998952 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
220-342, + strand, RNAmicro p=0.998952 |
|
318-391, ur29d05.x1 Soares_mouse_NMBP Mus musculus cDNA clone IMAGE
(gb|AW743771.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, LL2-32 Hematopoietic Stem Cell Subtracted Library Mus musculus cDNA
(gb|BU699209.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, UI-M-HU0-crb-d-12-0-UI.r1 NIH_BMAP_HU0 Mus musculus cDNA clone
(gb|CO425738.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, Hw_loin_70_050829_B09 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV791525.1|), blast E-value=3e-21, identity=93.51% |
|
318-391, LB02521.CR_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873677.1|),
blast E-value=3e-21, identity=93.51% |
|
318-391, LB02217.CR_K08 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240114.1|),
blast E-value=3e-21, identity=93.51% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
318-391, ur29d05.x1 Soares_mouse_NMBP Mus musculus cDNA clone IMAGE
(gb|AW743771.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, LL2-32 Hematopoietic Stem Cell Subtracted Library Mus musculus cDNA
(gb|BU699209.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, UI-M-HU0-crb-d-12-0-UI.r1 NIH_BMAP_HU0 Mus musculus cDNA clone
(gb|CO425738.1|), blast E-value=1e-20, identity=93.24% |
|
318-391, Hw_loin_70_050829_B09 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV791525.1|), blast E-value=3e-21, identity=93.51% |
|
318-391, LB02521.CR_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873677.1|),
blast E-value=3e-21, identity=93.51% |
|
318-391, LB02217.CR_K08 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240114.1|),
blast E-value=3e-21, identity=93.51% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map