Non-Coding RNA Search

Fet1-UMC-pd20fet-011-h06

Sequence:


               
               CCTGCTGTTTTTCCAGGCCAGTGTGTGTTTATAATTGTGAATGCACTGCCTATATGCACA
TGGCGTAAGAGTTAGTATACTACATGAGACTGCATGTGAAGCCATATGTGTACTTGTGGG
GTAGCCGCAGAGGTGTACTTATGTTGTGGTTGTGTAGATAATCCATCTGTGACGATGTAA
ATAGTGCAAAGGTGAAGGTGGAATTACACgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtg
cgtgcgtatgtgtatatagatgtatataggtgtgtatatatatgtgtgtgtgtATATGTA
CATGTGTATATATATATTAGGTACCAAGCAGACGTTATGCCTTTCTGCTTTGTACTGTAC
TACTGCTGCTAGCTAATAACCAGCAAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCTGTTTTTCCAGGCCAGTGTGTGTTTATAATTGTGAATGCACTGCCTATATGCACA
TGGCGTAAGAGTTAGTATACTACATGAGACTGCATGTGAAGCCATATGTGTACTTGTGGG
GTAGCCGCAGAGGTGTACTTATGTTGTGGTTGTGTAGATAATCCATCTGTGACGATGTAA
ATAGTGCAAAGGTGAAGGTGGAATTACACgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtg
cgtgcgtatgtgtatatagatgtatataggtgtgtatatatatgtgtgtgtgtATATGTA
CATGTGTATATATATATTAGGTACCAAGCAGACGTTATGCCTTTCTGCTTTGTACTGTAC
TACTGCTGCTAGCTAATAACCAGCAAAATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-391, - strand, RNAz p=0.995142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-391, - strand, RNAz p=0.995142

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               220-342, + strand, RNAmicro p=0.998952

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               220-342, + strand, RNAmicro p=0.998952

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               318-391, ur29d05.x1 Soares_mouse_NMBP Mus musculus cDNA clone IMAGE 
(gb|AW743771.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, LL2-32 Hematopoietic Stem Cell Subtracted Library Mus musculus cDNA 
(gb|BU699209.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, UI-M-HU0-crb-d-12-0-UI.r1 NIH_BMAP_HU0 Mus musculus cDNA clone 
(gb|CO425738.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, Hw_loin_70_050829_B09 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV791525.1|), blast E-value=3e-21, identity=93.51% 
               

               
               318-391, LB02521.CR_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873677.1|), 
blast E-value=3e-21, identity=93.51% 
               

               
               318-391, LB02217.CR_K08 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240114.1|), 
blast E-value=3e-21, identity=93.51%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               318-391, ur29d05.x1 Soares_mouse_NMBP Mus musculus cDNA clone IMAGE 
(gb|AW743771.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, LL2-32 Hematopoietic Stem Cell Subtracted Library Mus musculus cDNA 
(gb|BU699209.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, UI-M-HU0-crb-d-12-0-UI.r1 NIH_BMAP_HU0 Mus musculus cDNA clone 
(gb|CO425738.1|), blast E-value=1e-20, identity=93.24% 
               

               
               318-391, Hw_loin_70_050829_B09 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV791525.1|), blast E-value=3e-21, identity=93.51% 
               

               
               318-391, LB02521.CR_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV873677.1|), 
blast E-value=3e-21, identity=93.51% 
               

               
               318-391, LB02217.CR_K08 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE240114.1|), 
blast E-value=3e-21, identity=93.51%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               210-391, gnl|bosTau2|chr11 (67191942-67191754)
               

               
               210-391, gnl|Hg17|chrX (117937236-117937415)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-391, gnl|bosTau2|chr11 (67191942-67191754)
               

               
               210-391, gnl|Hg17|chrX (117937236-117937415)

	318-391, ur29d05.x1 Soares_mouse_NMBP Mus musculus cDNA clone IMAGE (gb\|AW743771.1\|), blast E-value=1e-20, identity=93.24%
	318-391, LL2-32 Hematopoietic Stem Cell Subtracted Library Mus musculus cDNA (gb\|BU699209.1\|), blast E-value=1e-20, identity=93.24%
	318-391, UI-M-HU0-crb-d-12-0-UI.r1 NIH_BMAP_HU0 Mus musculus cDNA clone (gb\|CO425738.1\|), blast E-value=1e-20, identity=93.24%
	318-391, Hw_loin_70_050829_B09 Bos taurus CF-24-HW loin cDNA library Bos (gb\|DV791525.1\|), blast E-value=3e-21, identity=93.51%
	318-391, LB02521.CR_M20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV873677.1\|), blast E-value=3e-21, identity=93.51%
	318-391, LB02217.CR_K08 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb\|EE240114.1\|), blast E-value=3e-21, identity=93.51%

	210-391, gnl\|bosTau2\|chr11 (67191942-67191754)
	210-391, gnl\|Hg17\|chrX (117937236-117937415)