Non-Coding RNA Search

Liv1-LVR010004C01

Sequence:


               
               TTTTGTGCTTCAAAGCAACTCTAGTCATTGGCCTTATTCTTCAGAATTATACATTCAGTC
TCTAGACCAGTTAACACAACCCTTGTTTCAATCCCTGTAAAGCTGAAGCCTCTTCATGCA
TGGCCTTGCACTGAATGAATTCTCCCAATACTTGCATGATTCCTAAAATGTGGTCATGGA
AGTTGAATGGGAGCAGTCATTCTATTGTGTTAATAAACCGCTAAGCCTACCAAGGCCAAG
GACGATTTGTTACATCACTTGATTCAGCTAGGCTGCCCTATTGCTTAAATTAAAGTAGCA
GTTCCTAGCTGAGGACGGTTTGTTCCCCAGGAAACATTTGGCAATGTCTGGAGATGTTTT
TGGTTTCCACAGCCAGAGGCAAATGAGAATTGGCATctggcatctagtgggtgaagacta
ggaatgccgctaaacatctcaaaatgcacagcacaggcccccTGCACACACCTCCCCCTA
CACGAAAAATTATCTGGCCCCCTATGTCAGTAGTGCTAATAACTAAGGTTGAAAGCCCTG
ATTGAAAGTAATGTTTTCTTTTTTCCAGGTTTTATGGTATTTTTTTCTCCCCTCTGTTAC
TCAGTTTGAATGACTGTGAATCTCACTTTGTTCTTGATATCTTGAAATAATGGCAAGTGA
CTTCATATTGAGAAGTGAAACTCATTTTCTCAGGAGAGTGTTTATTTATCTACCCTTTCA
TAATCAGAGTTTGAAAATATTTAAATAATGACTTCATAGGATGACTGTGACTAGTATAGA
AACAATAATAAAGCTCATTTAGTTTTTATTTTGGATGGCTTGTGTATAAATAATTGTTGA
AGTTTGGAAGTAGATATTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTGCTTCAAAGCAACTCTAGTCATTGGCCTTATTCTTCAGAATTATACATTCAGTC
TCTAGACCAGTTAACACAACCCTTGTTTCAATCCCTGTAAAGCTGAAGCCTCTTCATGCA
TGGCCTTGCACTGAATGAATTCTCCCAATACTTGCATGATTCCTAAAATGTGGTCATGGA
AGTTGAATGGGAGCAGTCATTCTATTGTGTTAATAAACCGCTAAGCCTACCAAGGCCAAG
GACGATTTGTTACATCACTTGATTCAGCTAGGCTGCCCTATTGCTTAAATTAAAGTAGCA
GTTCCTAGCTGAGGACGGTTTGTTCCCCAGGAAACATTTGGCAATGTCTGGAGATGTTTT
TGGTTTCCACAGCCAGAGGCAAATGAGAATTGGCATctggcatctagtgggtgaagacta
ggaatgccgctaaacatctcaaaatgcacagcacaggcccccTGCACACACCTCCCCCTA
CACGAAAAATTATCTGGCCCCCTATGTCAGTAGTGCTAATAACTAAGGTTGAAAGCCCTG
ATTGAAAGTAATGTTTTCTTTTTTCCAGGTTTTATGGTATTTTTTTCTCCCCTCTGTTAC
TCAGTTTGAATGACTGTGAATCTCACTTTGTTCTTGATATCTTGAAATAATGGCAAGTGA
CTTCATATTGAGAAGTGAAACTCATTTTCTCAGGAGAGTGTTTATTTATCTACCCTTTCA
TAATCAGAGTTTGAAAATATTTAAATAATGACTTCATAGGATGACTGTGACTAGTATAGA
AACAATAATAAAGCTCATTTAGTTTTTATTTTGGATGGCTTGTGTATAAATAATTGTTGA
AGTTTGGAAGTAGATATTGTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               268-425, - strand, RNAz p=0.999453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-425, - strand, RNAz p=0.999453

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-863, gnl|bosTau2|chr22 (26674766-26673952)
               

               
               6-863, gnl|Hg17|chr3 (65613589-65612737)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-863, gnl|bosTau2|chr22 (26674766-26673952)
               

               
               6-863, gnl|Hg17|chr3 (65613589-65612737)

	6-863, gnl\|bosTau2\|chr22 (26674766-26673952)
	6-863, gnl\|Hg17\|chr3 (65613589-65612737)