Non-Coding RNA Search

Liv1-LVR010012A12

Sequence:


               
               TATTGAAGTATGATTGATTTACAATGTTGCTGTCACTCCGGGGTCTTAATAAATAAATGA
GGGTTTCATTTGGAGCACTTTACTGTCAAAACTTGTCTCACACATTGGATGGGATGCTTT
TCCTTAAATATTAACAGTGGAGGTGGAGGGTGAGGGGGTGAGTGTGTGCATGTGTGTGTT
TACAGACACACATCTTCTGTGAGAAATATTTTGGACTTCGCATACAATTTCTCATTTTTC
TCCTTTGACGCTAGGGAAGACAATGCCCTGAATGAACTCCGGACCTGGGAGCTTTGCATT
CCAGTCCTTTCTCCCCTACTGACCACAGTCCTCACAGTGAAGGCAGTGTTTTCGGCTATG
AAGTCACACACTTCCTGGCACCTCTCTGGGGGTAGCCTTCCTAGGCTTGGCTGTAAGAAA
TAGCTCTAAGCTCATGCACCAGTCTCCCCCCAGCCCCTCCAGCTCCCCTCCTTCTCCCCC
TCCCTATTGGGGCACTAGTCTTTGGAGATAGAAATTTGACCTTAGAGCCAAACACTCTCT
GATGATAGGCTAATGCTTGTATTTACTAATGAACTTCCCCTTTGACAGTCATTGGCTTCA
GGGCCCCAAACCAAGCTCTCAGGCTGCTTTCATGCTGGGCCAAAACATACTCCTTATTTC
CTCCCAGTTTCTTAAACAGTGAAGCAATGACATCTTACAGAACCGTCTGTGTTAGTGACT
AGATTGAGATGACCTGCGATCCGGCCCTGCTGTGGCTCGAGGGAGGGAGAGAGGGCGGAG
GAGATGGGAGCCTGGGGAGGACCCTGGGTGGACGGAGGAAGGAGTGTGGGCTCTGTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGAAGTATGATTGATTTACAATGTTGCTGTCACTCCGGGGTCTTAATAAATAAATGA
GGGTTTCATTTGGAGCACTTTACTGTCAAAACTTGTCTCACACATTGGATGGGATGCTTT
TCCTTAAATATTAACAGTGGAGGTGGAGGGTGAGGGGGTGAGTGTGTGCATGTGTGTGTT
TACAGACACACATCTTCTGTGAGAAATATTTTGGACTTCGCATACAATTTCTCATTTTTC
TCCTTTGACGCTAGGGAAGACAATGCCCTGAATGAACTCCGGACCTGGGAGCTTTGCATT
CCAGTCCTTTCTCCCCTACTGACCACAGTCCTCACAGTGAAGGCAGTGTTTTCGGCTATG
AAGTCACACACTTCCTGGCACCTCTCTGGGGGTAGCCTTCCTAGGCTTGGCTGTAAGAAA
TAGCTCTAAGCTCATGCACCAGTCTCCCCCCAGCCCCTCCAGCTCCCCTCCTTCTCCCCC
TCCCTATTGGGGCACTAGTCTTTGGAGATAGAAATTTGACCTTAGAGCCAAACACTCTCT
GATGATAGGCTAATGCTTGTATTTACTAATGAACTTCCCCTTTGACAGTCATTGGCTTCA
GGGCCCCAAACCAAGCTCTCAGGCTGCTTTCATGCTGGGCCAAAACATACTCCTTATTTC
CTCCCAGTTTCTTAAACAGTGAAGCAATGACATCTTACAGAACCGTCTGTGTTAGTGACT
AGATTGAGATGACCTGCGATCCGGCCCTGCTGTGGCTCGAGGGAGGGAGAGAGGGCGGAG
GAGATGGGAGCCTGGGGAGGACCCTGGGTGGACGGAGGAAGGAGTGTGGGCTCTGTGAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               113-249, + strand, RNAz p=0.850476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-249, + strand, RNAz p=0.850476

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               34-731, gnl|bosTau2|chr26 (22387375-22388094)
               

               
               34-731, gnl|Hg17|chr10 (114812554-114813211)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-731, gnl|bosTau2|chr26 (22387375-22388094)
               

               
               34-731, gnl|Hg17|chr10 (114812554-114813211)

	34-731, gnl\|bosTau2\|chr26 (22387375-22388094)
	34-731, gnl\|Hg17\|chr10 (114812554-114813211)