Non-Coding RNA Search

Liv1-LVR010015D08

Sequence:


               
               TGGTGAAAGGTGAGGGAACAGCTGATCCGTCTGTGGGGTAAGAAACTTGGCCTAATTTGG
GGGCGGTTTTATGGGGGGCCACCCCACTTTCAAGCCTGTGAAAGGATCATCTAAGGGAAC
CGGTAAAGGCGGGTGGAGGAGCGTTTGGGTGTTAACACTTTCCGTACTGGAGAAACCACC
CCCACAGTTTTGAGAGTTCTTGGTCTCAGGGGGGCCGTGATCAAGGGGATACCCAGTCAC
TGTTCTCGCCTCCATCTCAGTCCTTCTTTATAAAGCTTGAAACGCTTAAGGGAGTTGAGG
GAGGCCGAAGTCTGCTTATTCTCAGCCAGGCAAGACTTGGCCTCACAAACCTTCCCGTTC
CCCTCTCCCCCAGCCACCCTCCGCCCCACCTCAATCTAAAGGCCTTTATGCCACTGAATT
CCTGAAGGAAAACATTACAAGGTGTAGAATGTTAAAAGAACTCTGAAGCCCTACAGCGTG
GGGGGATGAGACACCCCCCCCCCCCGCAAAGCAAACAACCGAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGAAAGGTGAGGGAACAGCTGATCCGTCTGTGGGGTAAGAAACTTGGCCTAATTTGG
GGGCGGTTTTATGGGGGGCCACCCCACTTTCAAGCCTGTGAAAGGATCATCTAAGGGAAC
CGGTAAAGGCGGGTGGAGGAGCGTTTGGGTGTTAACACTTTCCGTACTGGAGAAACCACC
CCCACAGTTTTGAGAGTTCTTGGTCTCAGGGGGGCCGTGATCAAGGGGATACCCAGTCAC
TGTTCTCGCCTCCATCTCAGTCCTTCTTTATAAAGCTTGAAACGCTTAAGGGAGTTGAGG
GAGGCCGAAGTCTGCTTATTCTCAGCCAGGCAAGACTTGGCCTCACAAACCTTCCCGTTC
CCCTCTCCCCCAGCCACCCTCCGCCCCACCTCAATCTAAAGGCCTTTATGCCACTGAATT
CCTGAAGGAAAACATTACAAGGTGTAGAATGTTAAAAGAACTCTGAAGCCCTACAGCGTG
GGGGGATGAGACACCCCCCCCCCCCGCAAAGCAAACAACCGAATCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               15-133, - strand, RNAz p=0.933963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-133, - strand, RNAz p=0.933963

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-292, gnl|bosTau2|chr5 (25270300-25270591)
               

               
               1-292, gnl|canFam2|chr27 (4527282-4526548)
               

               
               1-292, gnl|dasNov1|scaffold_13801 (19537-18825)
               

               
               1-292, gnl|echTel1|scaffold_291806 (8135-7441)
               

               
               1-292, gnl|hg17|chr12 (52407191-52407923)
               

               
               1-292, gnl|Hg17|chr12 (52407492-52407191)
               

               
               1-292, gnl|loxAfr1|scaffold_19008 (7460-6748)
               

               
               1-292, gnl|mm7|chr15 (102707942-102708648)
               

               
               1-292, gnl|Mm7|chr15 (102708241-102707953)
               

               
               1-292, gnl|oryCun1|scaffold_207706 (68855-69600)
               

               
               1-292, gnl|panTro1|chr10 (53653973-53654701)
               

               
               1-292, gnl|rheMac2|chr11 (50815451-50816180)
               

               
               1-292, gnl|rn3|chr7 (141547092-141547785)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-292, gnl|bosTau2|chr5 (25270300-25270591)
               

               
               1-292, gnl|canFam2|chr27 (4527282-4526548)
               

               
               1-292, gnl|dasNov1|scaffold_13801 (19537-18825)
               

               
               1-292, gnl|echTel1|scaffold_291806 (8135-7441)
               

               
               1-292, gnl|hg17|chr12 (52407191-52407923)
               

               
               1-292, gnl|Hg17|chr12 (52407492-52407191)
               

               
               1-292, gnl|loxAfr1|scaffold_19008 (7460-6748)
               

               
               1-292, gnl|mm7|chr15 (102707942-102708648)
               

               
               1-292, gnl|Mm7|chr15 (102708241-102707953)
               

               
               1-292, gnl|oryCun1|scaffold_207706 (68855-69600)
               

               
               1-292, gnl|panTro1|chr10 (53653973-53654701)
               

               
               1-292, gnl|rheMac2|chr11 (50815451-50816180)
               

               
               1-292, gnl|rn3|chr7 (141547092-141547785)

	1-292, gnl\|bosTau2\|chr5 (25270300-25270591)
	1-292, gnl\|canFam2\|chr27 (4527282-4526548)
	1-292, gnl\|dasNov1\|scaffold_13801 (19537-18825)
	1-292, gnl\|echTel1\|scaffold_291806 (8135-7441)
	1-292, gnl\|hg17\|chr12 (52407191-52407923)
	1-292, gnl\|Hg17\|chr12 (52407492-52407191)
	1-292, gnl\|loxAfr1\|scaffold_19008 (7460-6748)
	1-292, gnl\|mm7\|chr15 (102707942-102708648)
	1-292, gnl\|Mm7\|chr15 (102708241-102707953)
	1-292, gnl\|oryCun1\|scaffold_207706 (68855-69600)
	1-292, gnl\|panTro1\|chr10 (53653973-53654701)
	1-292, gnl\|rheMac2\|chr11 (50815451-50816180)
	1-292, gnl\|rn3\|chr7 (141547092-141547785)