Non-Coding RNA Search

Liv1-LVR010021H10

Sequence:


               
               AAAAGGGTTTTATGTCCTGGACCCCAGGGAAGTAAGGCTCGCCCCGTGAAACAGGCATGG
GCACTGCAATGTGGGGTCCTGGCTCTGAGGGCAGGAGAGAGGCCGGGAGAAATCTGAGAA
GGCTTCATGGAAGTGGTGGCAGGGGAGATGGGTCCCTAGCCCTGGGACCTGGAAGAAGGT
TAGAGAAAGGGCAGAGAGGCAGCCCTGGCAGGTGGGAGGAGCCCGGCAAGGTGAGGCTGG
CTGGAGGAGGGCTAGATGGAGCAAATGAGTTGTCACCAGGCCATTCAGCAGGGGCCTTGA
ATGCACTGATCAGCACCAACAATAGCTCTCCATGGGCACCAGCATCCCAAGAAGGATTTT
ACAGGCCTGATCTCACTTAATTAGTCCAGCAGCCTTGGAAAGGAGGTGCTGTTACAATCC
CTATTTTACAAGGGGGAAAGCTGCAGCTCAGAAGGGTCAAGGACTTGCCCAAGGTCAGGA
GCAGAGCTAGGAGTCTAACCAGGCCAGCGACAGAGCCTTCCCTTCTCAGAGATCACAGCC
TCAGTGTGTAGCCTGGGAGGGGCTTCCCCAGGGCTTCCAGAGATGGCATCTGGGAGTGTT
TCCAGCAGGTTCTATTGCAGAGGTGAAGCCACACGACAGAGCTCAGAGAGGTCTCTTGTT
AGCCTCTCTGGCCAAAGGACAGGATTTCAAGTCGGTTTCCATGGCAGGCCAACTCTCCCT
CATTCTCATGTCATGGGGAGAATCTAAGGCCGGGTGGCCGAGGCTCAGCGAGACAGTCTG
TAAGGATTGATTAGCAATGTCTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGGTTTTATGTCCTGGACCCCAGGGAAGTAAGGCTCGCCCCGTGAAACAGGCATGG
GCACTGCAATGTGGGGTCCTGGCTCTGAGGGCAGGAGAGAGGCCGGGAGAAATCTGAGAA
GGCTTCATGGAAGTGGTGGCAGGGGAGATGGGTCCCTAGCCCTGGGACCTGGAAGAAGGT
TAGAGAAAGGGCAGAGAGGCAGCCCTGGCAGGTGGGAGGAGCCCGGCAAGGTGAGGCTGG
CTGGAGGAGGGCTAGATGGAGCAAATGAGTTGTCACCAGGCCATTCAGCAGGGGCCTTGA
ATGCACTGATCAGCACCAACAATAGCTCTCCATGGGCACCAGCATCCCAAGAAGGATTTT
ACAGGCCTGATCTCACTTAATTAGTCCAGCAGCCTTGGAAAGGAGGTGCTGTTACAATCC
CTATTTTACAAGGGGGAAAGCTGCAGCTCAGAAGGGTCAAGGACTTGCCCAAGGTCAGGA
GCAGAGCTAGGAGTCTAACCAGGCCAGCGACAGAGCCTTCCCTTCTCAGAGATCACAGCC
TCAGTGTGTAGCCTGGGAGGGGCTTCCCCAGGGCTTCCAGAGATGGCATCTGGGAGTGTT
TCCAGCAGGTTCTATTGCAGAGGTGAAGCCACACGACAGAGCTCAGAGAGGTCTCTTGTT
AGCCTCTCTGGCCAAAGGACAGGATTTCAAGTCGGTTTCCATGGCAGGCCAACTCTCCCT
CATTCTCATGTCATGGGGAGAATCTAAGGCCGGGTGGCCGAGGCTCAGCGAGACAGTCTG
TAAGGATTGATTAGCAATGTCTGCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               88-201, + strand, RNAz p=0.938403
               

               
               498-606, + strand, RNAz p=0.900936

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-201, + strand, RNAz p=0.938403
               

               
               498-606, + strand, RNAz p=0.900936

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-369, gnl|bosTau2|chr16 (21382680-21382300)
               

               
               11-369, gnl|Hg17|chr1 (11939272-11940020)
               


               
               498-661, gnl|bosTau2|chr16 (21381906-21381743)
               

               
               498-661, gnl|Hg17|chr1 (11940552-11940696)
               

               
               498-661, gnl|Mm7|chr4 (146923243-146923080)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-369, gnl|bosTau2|chr16 (21382680-21382300)
               

               
               11-369, gnl|Hg17|chr1 (11939272-11940020)
               


               
               498-661, gnl|bosTau2|chr16 (21381906-21381743)
               

               
               498-661, gnl|Hg17|chr1 (11940552-11940696)
               

               
               498-661, gnl|Mm7|chr4 (146923243-146923080)

	88-201, + strand, RNAz p=0.938403
	498-606, + strand, RNAz p=0.900936

	11-369, gnl\|bosTau2\|chr16 (21382680-21382300)
	11-369, gnl\|Hg17\|chr1 (11939272-11940020)

	498-661, gnl\|bosTau2\|chr16 (21381906-21381743)
	498-661, gnl\|Hg17\|chr1 (11940552-11940696)
	498-661, gnl\|Mm7\|chr4 (146923243-146923080)