Non-Coding RNA Search

Liv1-LVR010022C03

Sequence:


               
               CCTTCTCCATTGCCTCAGACCCGGCTTCCTCCTCCTCCTGCTACCTGGAGGATCATGTGA
GCAAGGAGGCTGAGTGCCTCCTTGGCAAGTTCCAGGAGCTGATGGCAGGGCCTGGGCACT
TTGATCCCTATGACCACATTGTGGTGTCAGTGGGCCGTGTCATCGGTGCCATGTGCTTCG
GGAAGGGCTTCCCACAGAGCAGTGAGGAGATGTTCAGCATCGTGAAGAACAGTCATGAAT
TTGTGGAGACCGCCTCATCCGGGAACCCCGTGGACTTCTTCCCCATCCTTAGATATCTGC
CCAGCCCTACTCTGCAAAGATTCAAGAGTTTCAATCAAAGGCTCCTGCAATTCCTGAGGA
AAATGGTCCAGGAGCGCTATCGGGACTTTGACAAGAACTGTATCCAGGACATCACAAGCG
CCCTATTCAAGCACAGCGAGGAGAATTCCAGCACCAGCGGTGGCCTCATCTCCCAGGAGA
AGACCATCAACCTTGTCAATGACATTTTTGGAGCCGGATTTGATACAATTACCACAGCCA
TCTCCTGGAGCCTTTTATACCTTGTGACATATCCTGAGATACAGAAGAAGATCCAGAAGG
AGCTGGACACAGTGATTGGCCGGGCGCGGCGGCCCCGGCTCTCCGACAGACCCCCAGCTG
CCCTATATGGAGGCCTTCATCCTGGAGCTCTTCCGACACACCTCCTTCGTTCCCTTCACC
ATCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCTCCATTGCCTCAGACCCGGCTTCCTCCTCCTCCTGCTACCTGGAGGATCATGTGA
GCAAGGAGGCTGAGTGCCTCCTTGGCAAGTTCCAGGAGCTGATGGCAGGGCCTGGGCACT
TTGATCCCTATGACCACATTGTGGTGTCAGTGGGCCGTGTCATCGGTGCCATGTGCTTCG
GGAAGGGCTTCCCACAGAGCAGTGAGGAGATGTTCAGCATCGTGAAGAACAGTCATGAAT
TTGTGGAGACCGCCTCATCCGGGAACCCCGTGGACTTCTTCCCCATCCTTAGATATCTGC
CCAGCCCTACTCTGCAAAGATTCAAGAGTTTCAATCAAAGGCTCCTGCAATTCCTGAGGA
AAATGGTCCAGGAGCGCTATCGGGACTTTGACAAGAACTGTATCCAGGACATCACAAGCG
CCCTATTCAAGCACAGCGAGGAGAATTCCAGCACCAGCGGTGGCCTCATCTCCCAGGAGA
AGACCATCAACCTTGTCAATGACATTTTTGGAGCCGGATTTGATACAATTACCACAGCCA
TCTCCTGGAGCCTTTTATACCTTGTGACATATCCTGAGATACAGAAGAAGATCCAGAAGG
AGCTGGACACAGTGATTGGCCGGGCGCGGCGGCCCCGGCTCTCCGACAGACCCCCAGCTG
CCCTATATGGAGGCCTTCATCCTGGAGCTCTTCCGACACACCTCCTTCGTTCCCTTCACC
ATCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856085|ref|XP_591450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856085|ref|XP_591450.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.928996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.928996

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-395, gnl|bosTau2|chr21 (22936603-22936997)
               

               
               1-395, gnl|Hg17|chr15 (72829569-72829963)
               

               
               1-395, gnl|Mm7|chr9 (57709762-57709368)
               


               
               606-725, gnl|bosTau2|chr21 (22911565-22911447)
               

               
               606-725, gnl|Hg17|chr15 (72800717-72800599)
               

               
               606-725, gnl|Mm7|chr9 (57729737-57729855)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr21 (22936603-22936997)
               

               
               1-395, gnl|Hg17|chr15 (72829569-72829963)
               

               
               1-395, gnl|Mm7|chr9 (57709762-57709368)
               


               
               606-725, gnl|bosTau2|chr21 (22911565-22911447)
               

               
               606-725, gnl|Hg17|chr15 (72800717-72800599)
               

               
               606-725, gnl|Mm7|chr9 (57729737-57729855)

	1-395, gnl\|bosTau2\|chr21 (22936603-22936997)
	1-395, gnl\|Hg17\|chr15 (72829569-72829963)
	1-395, gnl\|Mm7\|chr9 (57709762-57709368)

	606-725, gnl\|bosTau2\|chr21 (22911565-22911447)
	606-725, gnl\|Hg17\|chr15 (72800717-72800599)
	606-725, gnl\|Mm7\|chr9 (57729737-57729855)