Non-Coding RNA Search

Liv1-LVR010028E02

Sequence:


               
               ACAAGATGGCGGCGGTAGCGGCAGTGGCGGCGCGTAGGAGGCGGTGAGGAGCCCGGATCC
CGGGAGCGCGCCCCGGACGCCCCCAGACCCCCTAAGTCTTGTATCTCTCCTTCCTGTATG
TTCTCCTGAGACTGCTGCCCCTGGCCTCGTGAGGACCCTTTATTTCTCTGGAGGCGGCCT
CACATGCCCCCCAGTCTCCTCGCGGTAGATCCTCGCGGCATTGGGGACCGTTGCTTCTTG
GGCTCTCCGCTCCGGCCAGGTCGCTCAAGAAGGCCGCAGCCGTGCGCTCTTCTTGGCCTT
GGCCGCTCTCTGCCGCCGCCCTCCCCTGGCAGCTTGCGGCAGTTAACGCTGCCGCCTCTT
TCCTGCATTGCGCGGGGCCATCAGGGCGGGGGACGAGACGCGGCCCGGCCTCCGGGAACG
CAGCCTGCTGCCCTCTGGCCCCTCAGCCGGGCGGGAAGCACCTCGGCCGGCAGTCCCACT
TGCCCTTCTTGCCCTCCCCTCCGAGAGCCCCGGACCCTCTCCTGCCCTTGTCTTCACGTG
GATAATAGCCCTGGCTTGTTCGGTGTTCACGGTCGTTGGGCACGGCTGGGCCAGGATGCC
GTTAAGTTCACAGCCGGCCTGGATGATGTTGCTCAAACACAACAATGGTTTGGTCTGCGT
TCTCGAGTTTATAGTACTGAAAAAATGGTTCGAGAAAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGATGGCGGCGGTAGCGGCAGTGGCGGCGCGTAGGAGGCGGTGAGGAGCCCGGATCC
CGGGAGCGCGCCCCGGACGCCCCCAGACCCCCTAAGTCTTGTATCTCTCCTTCCTGTATG
TTCTCCTGAGACTGCTGCCCCTGGCCTCGTGAGGACCCTTTATTTCTCTGGAGGCGGCCT
CACATGCCCCCCAGTCTCCTCGCGGTAGATCCTCGCGGCATTGGGGACCGTTGCTTCTTG
GGCTCTCCGCTCCGGCCAGGTCGCTCAAGAAGGCCGCAGCCGTGCGCTCTTCTTGGCCTT
GGCCGCTCTCTGCCGCCGCCCTCCCCTGGCAGCTTGCGGCAGTTAACGCTGCCGCCTCTT
TCCTGCATTGCGCGGGGCCATCAGGGCGGGGGACGAGACGCGGCCCGGCCTCCGGGAACG
CAGCCTGCTGCCCTCTGGCCCCTCAGCCGGGCGGGAAGCACCTCGGCCGGCAGTCCCACT
TGCCCTTCTTGCCCTCCCCTCCGAGAGCCCCGGACCCTCTCCTGCCCTTGTCTTCACGTG
GATAATAGCCCTGGCTTGTTCGGTGTTCACGGTCGTTGGGCACGGCTGGGCCAGGATGCC
GTTAAGTTCACAGCCGGCCTGGATGATGTTGCTCAAACACAACAATGGTTTGGTCTGCGT
TCTCGAGTTTATAGTACTGAAAAAATGGTTCGAGAAAGTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-355, + strand, RNAz p=0.891972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-355, + strand, RNAz p=0.891972

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               353-478, + strand, RNAmicro p=0.995818
               

               
               223-283, + strand, RNAmicro p=0.968646

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               353-478, + strand, RNAmicro p=0.995818
               

               
               223-283, + strand, RNAmicro p=0.968646

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-701, gnl|bosTau2|chr29 (32086308-32085615)
               

               
               1-701, gnl|Hg17|chr11 (62170652-62169944)
               

               
               1-701, gnl|Mm7|chr19 (8578279-8578947)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-701, gnl|bosTau2|chr29 (32086308-32085615)
               

               
               1-701, gnl|Hg17|chr11 (62170652-62169944)
               

               
               1-701, gnl|Mm7|chr19 (8578279-8578947)

	353-478, + strand, RNAmicro p=0.995818
	223-283, + strand, RNAmicro p=0.968646

	1-701, gnl\|bosTau2\|chr29 (32086308-32085615)
	1-701, gnl\|Hg17\|chr11 (62170652-62169944)
	1-701, gnl\|Mm7\|chr19 (8578279-8578947)